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Numpy compatible multinomial (apache#15219)
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* draft of multinomial

* rename to more concise name

* finish shape

* complete the forward function

* complete forward without handle 0 dimension & scalar

* handle 0 dimension

* add new line

* fix lint

* fix the build error

* fix lint

* finish unit test

* change the registration

* make multinomial support pvals as mx.ndarray

* delete newline

* fix lint error

* support input as list, mx.ndarray, np.ndarray & unit test

* fix lint

* fix the include error

* fix lint

* refactor & pass the tensor instead of tuple to kernel

* fix lint

* updata the doc

* address the comment
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stu1130 authored and haojin2 committed Aug 3, 2019
1 parent 918539e commit ef95513
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30 changes: 30 additions & 0 deletions python/mxnet/_numpy_op_doc.py
Original file line number Diff line number Diff line change
Expand Up @@ -109,3 +109,33 @@ def _np_repeat(a, repeats, axis=None):
the given axis.
"""
pass


def _npi_multinomial(a):
"""Draw samples from a multinomial distribution.
The multinomial distribution is a multivariate generalisation of the binomial distribution.
Take an experiment with one of ``p`` possible outcomes. An example of such an experiment is throwing a dice,
where the outcome can be 1 through 6. Each sample drawn from the distribution represents n such experiments.
Its values, ``X_i = [X_0, X_1, ..., X_p]``, represent the number of times the outcome was ``i``.
Parameters
----------
n : int
Number of experiments.
pvals : sequence of floats, length p
Probabilities of each of the p different outcomes. These should sum to 1
(however, the last element is always assumed to account for the remaining
probability, as long as ``sum(pvals[:-1]) <= 1)``.
size : int or tuple of ints, optional
Output shape. If the given shape is, e.g., ``(m, n, k)``, then ``m * n * k`` sam-
ples are drawn. Default is None, in which case a single value is returned.
Returns
-------
out : ndarray
The drawn samples, of shape size, if that was provided. If not, the shape is ``(N,)``.
In other words, each entry ``out[i,j,...,:]`` is an N-dimensional value drawn from the distribution.
"""
pass
41 changes: 40 additions & 1 deletion python/mxnet/ndarray/numpy/random.py
Original file line number Diff line number Diff line change
Expand Up @@ -17,11 +17,13 @@

"""Namespace for operators used in Gluon dispatched by F=ndarray."""
from __future__ import absolute_import
import numpy as np
from ...base import numeric_types
from ...context import current_context
from ..ndarray import NDArray
from . import _internal as _npi

__all__ = ['uniform', 'normal']
__all__ = ['uniform', 'normal', 'multinomial']


def _random_helper(random, sampler, params, shape, dtype, ctx, out, kwargs):
Expand Down Expand Up @@ -135,3 +137,40 @@ def normal(loc=0.0, scale=1.0, size=None, **kwargs):
out = kwargs.pop('out', None)
return _random_helper(_npi.random_normal, None,
[loc, scale], size, dtype, ctx, out, kwargs)


def multinomial(n, pvals, size=None):
"""Draw samples from a multinomial distribution.
The multinomial distribution is a multivariate generalisation of the binomial distribution.
Take an experiment with one of ``p`` possible outcomes. An example of such an experiment is throwing a dice,
where the outcome can be 1 through 6. Each sample drawn from the distribution represents n such experiments.
Its values, ``X_i = [X_0, X_1, ..., X_p]``, represent the number of times the outcome was ``i``.
Parameters
----------
n : int
Number of experiments.
pvals : sequence of floats, length p
Probabilities of each of the p different outcomes. These should sum to 1
(however, the last element is always assumed to account for the remaining
probability, as long as ``sum(pvals[:-1]) <= 1)``.
size : int or tuple of ints, optional
Output shape. If the given shape is, e.g., ``(m, n, k)``, then ``m * n * k`` sam-
ples are drawn. Default is None, in which case a single value is returned.
Returns
-------
out : ndarray
The drawn samples, of shape size, if that was provided. If not, the shape is ``(N,)``.
In other words, each entry ``out[i,j,...,:]`` is an N-dimensional value drawn from the distribution.
"""
if isinstance(pvals, NDArray):
return _npi.multinomial(pvals, pvals=None, n=n, size=size)
else:
if isinstance(pvals, np.ndarray):
pvals = pvals.tolist()
if any(isinstance(i, list) for i in pvals):
raise ValueError('object too deep for desired array')
return _npi.multinomial(n=n, pvals=pvals, size=size)
30 changes: 30 additions & 0 deletions python/mxnet/numpy/random.py
Original file line number Diff line number Diff line change
Expand Up @@ -98,3 +98,33 @@ def normal(loc=0.0, scale=1.0, size=None, **kwargs):
This function currently does not support ``loc`` and ``scale`` as ndarrays.
"""
return _mx_nd_np.random.normal(loc, scale, size, **kwargs)


def multinomial(n, pvals, size=None, **kwargs):
"""Draw samples from a multinomial distribution.
The multinomial distribution is a multivariate generalisation of the binomial distribution.
Take an experiment with one of ``p`` possible outcomes. An example of such an experiment is throwing a dice,
where the outcome can be 1 through 6. Each sample drawn from the distribution represents n such experiments.
Its values, ``X_i = [X_0, X_1, ..., X_p]``, represent the number of times the outcome was ``i``.
Parameters
----------
n : int
Number of experiments.
pvals : sequence of floats, length p
Probabilities of each of the p different outcomes. These should sum to 1
(however, the last element is always assumed to account for the remaining
probability, as long as ``sum(pvals[:-1]) <= 1)``.
size : int or tuple of ints, optional
Output shape. If the given shape is, e.g., ``(m, n, k)``, then ``m * n * k`` sam-
ples are drawn. Default is None, in which case a single value is returned.
Returns
-------
out : ndarray
The drawn samples, of shape size, if that was provided. If not, the shape is ``(N,)``.
In other words, each entry ``out[i,j,...,:]`` is an N-dimensional value drawn from the distribution.
"""
return _mx_nd_np.random.multinomial(n, pvals, size, **kwargs)
61 changes: 61 additions & 0 deletions src/operator/numpy/random/np_multinomial_op.cc
Original file line number Diff line number Diff line change
@@ -0,0 +1,61 @@
/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/

/*!
* Copyright (c) 2019 by Contributors
* \file np_multinomial_op.h
* \brief Operator for numpy sampling from multinomial distributions
*/
#include "./np_multinomial_op.h"

namespace mxnet {
namespace op {

DMLC_REGISTER_PARAMETER(NumpyMultinomialParam);

NNVM_REGISTER_OP(_npi_multinomial)
.describe(R"code(Draw samples from a multinomial distribution. "
"The multinomial distribution is a multivariate generalisation of the binomial distribution. "
"Take an experiment with one of p possible outcomes. "
"An example of such an experiment is throwing a dice, where the outcome can be 1 through 6. "
"Each sample drawn from the distribution represents n such experiments. "
"Its values, X_i = [X_0, X_1, ..., X_p], represent the number of times the outcome was i.
)code")
.set_num_inputs(
[](const nnvm::NodeAttrs& attrs) {
const NumpyMultinomialParam& param = nnvm::get<NumpyMultinomialParam>(attrs.parsed);
return param.pvals.has_value() ? 0U : 1U;
}
)
.set_num_outputs(1)
.set_attr_parser(ParamParser<NumpyMultinomialParam>)
.set_attr<mxnet::FInferShape>("FInferShape", NumpyMultinomialOpShape)
.set_attr<nnvm::FInferType>("FInferType", NumpyMultinomialOpType)
.set_attr<FResourceRequest>("FResourceRequest",
[](const nnvm::NodeAttrs& attrs) {
return std::vector<ResourceRequest>{
ResourceRequest::kRandom, ResourceRequest::kTempSpace};
})
.set_attr<FCompute>("FCompute<cpu>", NumpyMultinomialForward<cpu>)
.set_attr<nnvm::FGradient>("FGradient", MakeZeroGradNodes)
.add_argument("a", "NDArray-or-Symbol", "Source input")
.add_arguments(NumpyMultinomialParam::__FIELDS__());

} // namespace op
} // namespace mxnet
34 changes: 34 additions & 0 deletions src/operator/numpy/random/np_multinomial_op.cu
Original file line number Diff line number Diff line change
@@ -0,0 +1,34 @@
/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/

/*!
* Copyright (c) 2019 by Contributors
* \file np_multinomial_op.cu
* \brief Operator for numpy sampling from multinomial distributions
*/
#include "./np_multinomial_op.h"

namespace mxnet {
namespace op {

NNVM_REGISTER_OP(_npi_multinomial)
.set_attr<FCompute>("FCompute<gpu>", NumpyMultinomialForward<gpu>);

} // namespace op
} // namespace mxnet
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