Updates for the latest acryo

[hanjinliu]

• Use fsc_with_halfmaps inside calculate_fsc to tag halfmaps and the mask to the resulting layer.
• calculate_correlation is now more precise - it considers missing wedges and can be used along with cutff and multiple templates.

[codecov]

Codecov Report

Attention: Patch coverage is 82.22222% with 16 lines in your changes missing coverage. Please review.

Project coverage is 85.05%. Comparing base (d6a8bfa) to head (c9e8f7d).
Report is 13 commits behind head on main.

Files with missing lines	Patch %	Lines
cylindra/widgets/subwidgets/function_menu.py	65.95%	9 Missing and 7 partials ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #120      +/-   ##
==========================================
- Coverage   85.09%   85.05%   -0.05%     
==========================================
  Files         106      106              
  Lines       15053    15104      +51     
  Branches     3194     3214      +20     
==========================================
+ Hits        12810    12847      +37     
- Misses       1402     1411       +9     
- Partials      841      846       +5     

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