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Merge pull request #129 from haniffalab/dev
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update docs
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dannda authored Feb 26, 2024
2 parents c8f1eb5 + b991688 commit bb85740
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33 changes: 33 additions & 0 deletions sphinx/installation.rst
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Expand Up @@ -11,6 +11,9 @@ Installation

Download the WebAtlas Pipeline release. You can look for previous `releases on GitHub`_.

Using `wget`
""""""""""""

.. code-block:: shell
:caption: Input
Expand All @@ -34,6 +37,23 @@ Download the WebAtlas Pipeline release. You can look for previous `releases on G
2023-05-18 09:30:16 (9.12 MB/s) - ‘v0.5.1.tar.gz’ saved [2835534]
Using `curl`
""""""""""""

.. code-block:: shell
:caption: Input
curl -o v0.5.1.tar.gz https://github.com/haniffalab/webatlas-pipeline/archive/refs/tags/v0.5.1.tar.gz
.. code-block:: shell
:caption: Expected Output
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
Extract the WebAtlas compressed tag and change directory into the new repo.

.. code-block:: shell
Expand Down Expand Up @@ -119,11 +139,24 @@ Java is required by Nextflow. Refer to `Nextflow's guidelines <https://www.nextf

Enter the following command in your terminal to install Nextflow in the current directory:

Using `wget`
""""""""""""

.. code-block:: shell
:caption: Input
wget -qO- https://get.nextflow.io | bash
Using `curl`
""""""""""""

.. code-block:: shell
:caption: Input
curl -s https://get.nextflow.io | bash
.. code-block:: shell
:caption: Output
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