Size of asterisks in pathway plots now scales based on triangle size.

hancockinformatics · May 23, 2024 · 1f9b751 · 1f9b751
1 parent 48d7203
commit 1f9b751
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Showing 2 changed files with 9 additions and 4 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: pathlinkR
 Type: Package
 Title: Analyze and interpret RNA-Seq results
-Version: 1.1.6
+Version: 1.1.7
 Authors@R: c(
     person("Travis", "Blimkie", , "travis.m.blimkie@gmail.com", role = c("cre"), comment = c(ORCID = "0000-0001-8778-8627")),
     person("Andy", "An", , "andy@hancocklab.com", role = c("aut"))

diff --git a/R/pathwayPlots.R b/R/pathwayPlots.R
@@ -237,8 +237,13 @@ pathwayPlots <- function(
                 space="free"
             ) +
 
-            {if (includeGeneRatio) geom_point(aes(size=geneRatio))} +
-            {if (!includeGeneRatio) geom_point(size=size)} +
+            {
+                if (includeGeneRatio) {
+                    geom_point(aes(size=geneRatio))
+                } else {
+                    geom_point(size=size)
+                }
+            } +
 
             geom_point(
                 data=filter(
@@ -247,7 +252,7 @@ pathwayPlots <- function(
                 ),
                 mapping=aes(x=comparison, y=pathwayName),
                 shape=8,
-                size=2,
+                size=ifelse(size - 3 > 0, size - 3, 1),
                 colour="white",
                 show.legend=FALSE
             ) +