improve svtyper speed by ~30% #96
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avoids use of CRAM sequence and base-quals which otherwise do not need to be decoded. This changes the run-time of one test-case from 20.8 seconds to 14.9
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Does this bump the minimum version of pysam? |
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Probably v0.15.0? |
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hard to tell, but looks like 0.14.0 might be sufficient. |
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avoids use of CRAM sequence and base-quals which otherwise do
not need to be decoded.
This changes the run-time of one test-case from
20.8 seconds to 14.9