Skip to content

hailingfang/biobrary

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Biobrary

Introduction

Biobrary is a python library, which contain data and methods for biological computation.

Requirement

  • ete3

Install

  • using pip

pip install biobrary --user

  • manally install

git clone https://github.com/benjaminfang/biobrary.git

cd biobrary

mv biobrary $PYTHONPATH

where PYTHONPATH is python library searching path.

Usage

import biobrary  
dir(biobrary)  

Data and Method

  • bioparse

    • FASTA

      class for fasta file.

    • GTF

      class for gtf file.

  • tree

    • CircleNode

      class for phylogenic tree traverse and operations. And divide tree to circle node according to phylogenic distance.

About

A python library for bioinformatics

Resources

License

Stars

Watchers

Forks

Packages

No packages published