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[qob] Support loading RGs from FASTA files #12736

Merged
merged 12 commits into from
Apr 10, 2023
Merged

[qob] Support loading RGs from FASTA files #12736

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b371e1c
[batch] Create read-only fuse mounts shared between concurrent jvm jobs
daniel-goldstein Mar 13, 2023
37ca184
[qob] Support loading RGs from FASTA files
daniel-goldstein Feb 27, 2023
3590f86
add additional clarification to comment
daniel-goldstein Mar 21, 2023
c45d77b
fix
daniel-goldstein Mar 23, 2023
89b5083
add min_partitions to force worker jobs for the FASTA test
daniel-goldstein Mar 30, 2023
038b01a
allow storage requests
daniel-goldstein Apr 3, 2023
a004e9b
should start to see this fail on the tests now with workers that dont…
daniel-goldstein Apr 3, 2023
d6a0b52
Merge branch 'main' into qob-fasta
daniel-goldstein Apr 4, 2023
a982be0
thread storage and cloudfuse config through to worker jobs
daniel-goldstein Apr 5, 2023
cd5bd2b
Merge branch 'main' into qob-fasta
daniel-goldstein Apr 5, 2023
4d66b57
fixes
daniel-goldstein Apr 6, 2023
67ff3e1
set mounted to False after unmount
daniel-goldstein Apr 10, 2023
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2 changes: 0 additions & 2 deletions batch/batch/front_end/front_end.py
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Original file line number Diff line number Diff line change
Expand Up @@ -925,8 +925,6 @@ async def _create_jobs(userdata: dict, job_specs: dict, batch_id: int, update_id
raise web.HTTPBadRequest(reason='invalid cpu for jvm jobs. must be 1, 2, 4, or 8')
if 'memory' in resources and resources['memory'] == 'lowmem':
raise web.HTTPBadRequest(reason='jvm jobs cannot be on lowmem machines')
if 'storage' in resources:
raise web.HTTPBadRequest(reason='jvm jobs may not specify storage')
if machine_type is not None:
raise web.HTTPBadRequest(reason='jvm jobs may not specify machine_type')
if spec['process']['jar_spec']['type'] == 'git_revision':
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