update dependencies

hail-is · Jun 12, 2023 · 34a4f8d · 34a4f8d
1 parent dd383eb
commit 34a4f8d
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Showing 8 changed files with 67 additions and 55 deletions.
diff --git a/auth/pinned-requirements.txt b/auth/pinned-requirements.txt
@@ -4,12 +4,12 @@
 #
 #    pip-compile --output-file=hail/auth/pinned-requirements.txt hail/auth/requirements.txt
 #
-cachetools==5.3.0
+cachetools==5.3.1
     # via
     #   -c hail/auth/../gear/pinned-requirements.txt
     #   -c hail/auth/../hail/python/pinned-requirements.txt
     #   google-auth
-certifi==2022.12.7
+certifi==2023.5.7
     # via
     #   -c hail/auth/../gear/pinned-requirements.txt
     #   -c hail/auth/../hail/python/dev/pinned-requirements.txt
@@ -22,7 +22,7 @@ charset-normalizer==3.1.0
     #   -c hail/auth/../hail/python/pinned-requirements.txt
     #   -c hail/auth/../web_common/pinned-requirements.txt
     #   requests
-google-auth==2.17.3
+google-auth==2.19.1
     # via
     #   -c hail/auth/../gear/pinned-requirements.txt
     #   -c hail/auth/../hail/python/pinned-requirements.txt
@@ -72,9 +72,10 @@ six==1.16.0
     #   -c hail/auth/../hail/python/dev/pinned-requirements.txt
     #   -c hail/auth/../hail/python/pinned-requirements.txt
     #   google-auth
-urllib3==1.26.15
+urllib3==1.26.16
     # via
     #   -c hail/auth/../gear/pinned-requirements.txt
     #   -c hail/auth/../hail/python/dev/pinned-requirements.txt
     #   -c hail/auth/../hail/python/pinned-requirements.txt
+    #   google-auth
     #   requests
diff --git a/batch/pinned-requirements.txt b/batch/pinned-requirements.txt
@@ -103,7 +103,7 @@ tenacity==8.2.2
     # via
     #   -c hail/batch/../hail/python/pinned-requirements.txt
     #   plotly
-typing-extensions==4.5.0
+typing-extensions==4.6.3
     # via
     #   -c hail/batch/../hail/python/dev/pinned-requirements.txt
     #   -c hail/batch/../hail/python/pinned-requirements.txt
@@ -112,7 +112,7 @@ tzdata==2023.3
     # via
     #   -c hail/batch/../hail/python/pinned-requirements.txt
     #   pandas
-yarl==1.9.1
+yarl==1.9.2
     # via
     #   -c hail/batch/../gear/pinned-requirements.txt
     #   -c hail/batch/../hail/python/pinned-requirements.txt

diff --git a/ci/pinned-requirements.txt b/ci/pinned-requirements.txt
@@ -4,7 +4,7 @@
 #
 #    pip-compile --output-file=hail/ci/pinned-requirements.txt hail/ci/requirements.txt
 #
-certifi==2022.12.7
+certifi==2023.5.7
     # via
     #   -c hail/ci/../gear/pinned-requirements.txt
     #   -c hail/ci/../hail/python/dev/pinned-requirements.txt
@@ -26,7 +26,7 @@ click==8.1.3
     # via
     #   -c hail/ci/../hail/python/dev/pinned-requirements.txt
     #   zulip
-cryptography==41.0.0
+cryptography==41.0.1
     # via
     #   -c hail/ci/../hail/python/pinned-requirements.txt
     #   pyjwt
@@ -48,7 +48,7 @@ pycparser==2.21
     #   -c hail/ci/../hail/python/dev/pinned-requirements.txt
     #   -c hail/ci/../hail/python/pinned-requirements.txt
     #   cffi
-pyjwt[crypto]==2.6.0
+pyjwt[crypto]==2.7.0
     # via
     #   -c hail/ci/../hail/python/pinned-requirements.txt
     #   gidgethub
@@ -59,7 +59,7 @@ requests[security]==2.31.0
     #   -c hail/ci/../hail/python/pinned-requirements.txt
     #   matrix-client
     #   zulip
-typing-extensions==4.5.0
+typing-extensions==4.6.3
     # via
     #   -c hail/ci/../hail/python/dev/pinned-requirements.txt
     #   -c hail/ci/../hail/python/pinned-requirements.txt
@@ -68,7 +68,7 @@ uritemplate==4.1.1
     # via
     #   -c hail/ci/../gear/pinned-requirements.txt
     #   gidgethub
-urllib3==1.26.15
+urllib3==1.26.16
     # via
     #   -c hail/ci/../gear/pinned-requirements.txt
     #   -c hail/ci/../hail/python/dev/pinned-requirements.txt

diff --git a/gear/pinned-requirements.txt b/gear/pinned-requirements.txt
@@ -12,7 +12,7 @@ aiohttp==3.8.4
     #   kubernetes-asyncio
 aiohttp-session==2.12.0
     # via -r hail/gear/requirements.txt
-aiomysql==0.1.1
+aiomysql==0.2.0
     # via -r hail/gear/requirements.txt
 aiosignal==1.3.1
     # via
@@ -30,12 +30,12 @@ attrs==23.1.0
     #   -c hail/gear/../hail/python/hailtop/pinned-requirements.txt
     #   -c hail/gear/../hail/python/pinned-requirements.txt
     #   aiohttp
-cachetools==5.3.0
+cachetools==5.3.1
     # via
     #   -c hail/gear/../hail/python/hailtop/pinned-requirements.txt
     #   -c hail/gear/../hail/python/pinned-requirements.txt
     #   google-auth
-certifi==2022.12.7
+certifi==2023.5.7
     # via
     #   -c hail/gear/../hail/python/dev/pinned-requirements.txt
     #   -c hail/gear/../hail/python/hailtop/pinned-requirements.txt
@@ -62,7 +62,7 @@ google-api-core==2.11.0
     #   google-api-python-client
 google-api-python-client==2.88.0
     # via google-cloud-profiler
-google-auth==2.17.3
+google-auth==2.19.1
     # via
     #   -c hail/gear/../hail/python/hailtop/pinned-requirements.txt
     #   -c hail/gear/../hail/python/pinned-requirements.txt
@@ -100,7 +100,7 @@ multidict==6.0.4
     #   -c hail/gear/../hail/python/pinned-requirements.txt
     #   aiohttp
     #   yarl
-orjson==3.8.10
+orjson==3.9.1
     # via
     #   -c hail/gear/../hail/python/hailtop/pinned-requirements.txt
     #   -c hail/gear/../hail/python/pinned-requirements.txt
@@ -176,19 +176,20 @@ sortedcontainers==2.4.0
     #   -r hail/gear/requirements.txt
 uritemplate==4.1.1
     # via google-api-python-client
-urllib3==1.26.15
+urllib3==1.26.16
     # via
     #   -c hail/gear/../hail/python/dev/pinned-requirements.txt
     #   -c hail/gear/../hail/python/hailtop/pinned-requirements.txt
     #   -c hail/gear/../hail/python/pinned-requirements.txt
+    #   google-auth
     #   kubernetes-asyncio
     #   requests
 wrapt==1.15.0
     # via
     #   -c hail/gear/../hail/python/dev/pinned-requirements.txt
     #   -c hail/gear/../hail/python/pinned-requirements.txt
     #   prometheus-async
-yarl==1.9.1
+yarl==1.9.2
     # via
     #   -c hail/gear/../hail/python/hailtop/pinned-requirements.txt
     #   -c hail/gear/../hail/python/pinned-requirements.txt

diff --git a/hail/python/dev/pinned-requirements.txt b/hail/python/dev/pinned-requirements.txt
@@ -36,7 +36,7 @@ black==22.12.0
     # via -r hail/hail/python/dev/requirements.txt
 bleach==6.0.0
     # via nbconvert
-certifi==2022.12.7
+certifi==2023.5.7
     # via
     #   -c hail/hail/python/dev/../pinned-requirements.txt
     #   requests
@@ -90,7 +90,7 @@ executing==1.2.0
     # via stack-data
 fastjsonschema==2.17.1
     # via nbformat
-fonttools==4.39.4
+fonttools==4.40.0
     # via matplotlib
 fqdn==1.5.1
     # via jsonschema
@@ -287,7 +287,7 @@ pillow==9.5.0
     #   matplotlib
 pkgutil-resolve-name==1.3.10
     # via jsonschema
-platformdirs==3.5.1
+platformdirs==3.5.3
     # via
     #   black
     #   jupyter-core
@@ -331,7 +331,7 @@ pyparsing==3.0.9
     # via matplotlib
 pyrsistent==0.19.3
     # via jsonschema
-pytest==7.3.1
+pytest==7.3.2
     # via
     #   -r hail/hail/python/dev/requirements.txt
     #   pytest-asyncio
@@ -519,7 +519,7 @@ types-urllib3==1.26.25.13
     # via
     #   -r hail/hail/python/dev/requirements.txt
     #   types-requests
-typing-extensions==4.5.0
+typing-extensions==4.6.3
     # via
     #   -c hail/hail/python/dev/../pinned-requirements.txt
     #   astroid
@@ -529,7 +529,7 @@ typing-extensions==4.5.0
     #   pylint
 uri-template==1.2.0
     # via jsonschema
-urllib3==1.26.15
+urllib3==1.26.16
     # via
     #   -c hail/hail/python/dev/../pinned-requirements.txt
     #   requests

diff --git a/hail/python/hailtop/pinned-requirements.txt b/hail/python/hailtop/pinned-requirements.txt
@@ -16,30 +16,30 @@ attrs==23.1.0
     # via aiohttp
 azure-common==1.1.28
     # via azure-mgmt-storage
-azure-core==1.26.4
+azure-core==1.27.0
     # via
     #   azure-identity
     #   azure-mgmt-core
     #   azure-storage-blob
     #   msrest
-azure-identity==1.12.0
+azure-identity==1.13.0
     # via -r hail/hail/python/hailtop/requirements.txt
 azure-mgmt-core==1.4.0
     # via azure-mgmt-storage
 azure-mgmt-storage==20.1.0
     # via -r hail/hail/python/hailtop/requirements.txt
 azure-storage-blob==12.16.0
     # via -r hail/hail/python/hailtop/requirements.txt
-boto3==1.26.118
+boto3==1.26.151
     # via -r hail/hail/python/hailtop/requirements.txt
-botocore==1.29.118
+botocore==1.29.151
     # via
     #   -r hail/hail/python/hailtop/requirements.txt
     #   boto3
     #   s3transfer
-cachetools==5.3.0
+cachetools==5.3.1
     # via google-auth
-certifi==2022.12.7
+certifi==2023.5.7
     # via
     #   msrest
     #   requests
@@ -53,7 +53,7 @@ charset-normalizer==3.1.0
     #   requests
 commonmark==0.9.1
     # via rich
-cryptography==41.0.0
+cryptography==41.0.1
     # via
     #   azure-identity
     #   azure-storage-blob
@@ -70,15 +70,15 @@ google-api-core==2.11.0
     # via
     #   google-cloud-core
     #   google-cloud-storage
-google-auth==2.17.3
+google-auth==2.19.1
     # via
     #   -r hail/hail/python/hailtop/requirements.txt
     #   google-api-core
     #   google-cloud-core
     #   google-cloud-storage
 google-cloud-core==2.3.2
     # via google-cloud-storage
-google-cloud-storage==2.8.0
+google-cloud-storage==2.9.0
     # via -r hail/hail/python/hailtop/requirements.txt
 google-crc32c==1.5.0
     # via google-resumable-media
@@ -102,6 +102,8 @@ jmespath==1.0.1
     # via
     #   boto3
     #   botocore
+jproperties==2.1.1
+    # via -r hail/hail/python/hailtop/requirements.txt
 msal==1.22.0
     # via
     #   azure-identity
@@ -118,7 +120,7 @@ nest-asyncio==1.5.6
     # via -r hail/hail/python/hailtop/requirements.txt
 oauthlib==3.2.2
     # via requests-oauthlib
-orjson==3.8.10
+orjson==3.9.1
     # via -r hail/hail/python/hailtop/requirements.txt
 portalocker==2.7.0
     # via msal-extensions
@@ -139,7 +141,7 @@ pycparser==2.21
     # via cffi
 pygments==2.15.1
     # via rich
-pyjwt[crypto]==2.6.0
+pyjwt[crypto]==2.7.0
     # via msal
 python-dateutil==2.8.2
     # via botocore
@@ -159,30 +161,32 @@ rich==12.6.0
     # via -r hail/hail/python/hailtop/requirements.txt
 rsa==4.9
     # via google-auth
-s3transfer==0.6.0
+s3transfer==0.6.1
     # via boto3
 six==1.16.0
     # via
     #   azure-core
     #   azure-identity
     #   google-auth
     #   isodate
+    #   jproperties
     #   python-dateutil
 sortedcontainers==2.4.0
     # via -r hail/hail/python/hailtop/requirements.txt
 tabulate==0.9.0
     # via -r hail/hail/python/hailtop/requirements.txt
-typing-extensions==4.5.0
+typing-extensions==4.6.3
     # via
     #   azure-core
     #   azure-storage-blob
     #   janus
     #   rich
-urllib3==1.26.15
+urllib3==1.26.16
     # via
     #   botocore
+    #   google-auth
     #   requests
 uvloop==0.17.0 ; sys_platform != "win32"
     # via -r hail/hail/python/hailtop/requirements.txt
-yarl==1.9.1
+yarl==1.9.2
     # via aiohttp