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[compiler] Iterative
DistinctlyKeyed
Analysis (#12696)
* [compiler] Iterative `DistinctlyKeyed` Analysis Use iterative tree traversals to prevent exceeding stack size for large IRs. * traverse all ir nodes
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94 changes: 39 additions & 55 deletions
94
hail/src/main/scala/is/hail/expr/ir/DistinctlyKeyed.scala
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package is.hail.expr.ir | ||
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object DistinctlyKeyed { | ||
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def apply(node: BaseIR): DistinctKeyedAnalysis = { | ||
val distinctMemo = Memo.empty[Unit] | ||
analyze(node, distinctMemo) | ||
DistinctKeyedAnalysis(distinctMemo) | ||
} | ||
private def analyze(node:BaseIR, memo: Memo[Unit]): Unit = { | ||
def basicChildrenCheck(children: IndexedSeq[BaseIR]): Unit = { | ||
children.foreach(child => analyze(child, memo)) | ||
if (children.forall(child => memo.contains(child))) | ||
memo.bind(node, ()) | ||
} | ||
node match { | ||
case TableLiteral(_,_,_,_) => | ||
case x@TableRead(_, _, _) => | ||
if(x.isDistinctlyKeyed) | ||
memo.bind(node, ()) | ||
case TableParallelize(_,_) => | ||
case TableKeyBy(child, keys, _) => | ||
analyze(child, memo) | ||
if (child.typ.key.forall(cKey => keys.contains(cKey)) && memo.contains(child)) | ||
memo.bind(node, ()) | ||
case TableRange(_,_) => memo.bind(node, ()) | ||
case TableFilter(child, _) => basicChildrenCheck(IndexedSeq(child)) | ||
case TableHead(child, _) => basicChildrenCheck(IndexedSeq(child)) | ||
case TableTail(child, _) => basicChildrenCheck(IndexedSeq(child)) | ||
case TableRepartition(child, _, _) => basicChildrenCheck(IndexedSeq(child)) | ||
case TableJoin(left, right, _, _) => basicChildrenCheck(IndexedSeq(left, right)) | ||
case TableIntervalJoin(left, right, _, _) => basicChildrenCheck(IndexedSeq(left, right)) | ||
case TableMultiWayZipJoin(children, _, _) => basicChildrenCheck(children) | ||
case TableLeftJoinRightDistinct(left, right, _) => basicChildrenCheck(IndexedSeq(left, right)) | ||
case TableMapPartitions(child, _, _, _) => analyze(child, memo) | ||
case TableMapRows(child, _) => basicChildrenCheck(IndexedSeq(child)) | ||
case TableMapGlobals(child, _) => basicChildrenCheck(IndexedSeq(child)) | ||
case TableExplode(child, _) => analyze(child, memo) | ||
case TableUnion(children) => children.foreach(child => analyze(child, memo)) | ||
case TableDistinct(child) => | ||
memo.bind(node, ()) | ||
analyze(child, memo) | ||
case TableKeyByAndAggregate(child, _, _, _, _) => | ||
memo.bind(node, ()) | ||
analyze(child, memo) | ||
case TableAggregateByKey(child, _) => | ||
memo.bind(node, ()) | ||
analyze(child, memo) | ||
case TableOrderBy(child, _) => analyze(child, memo) | ||
case TableRename(child, _, _) => basicChildrenCheck(IndexedSeq(child)) | ||
case TableFilterIntervals(child, _, _) => basicChildrenCheck(IndexedSeq(child)) | ||
case TableToTableApply(child, _) => analyze(child, memo) | ||
case BlockMatrixToTableApply(_, _, _) => | ||
case BlockMatrixToTable(_) => | ||
case RelationalLetTable(_, _, body) => basicChildrenCheck(IndexedSeq(body)) | ||
val memo = Memo.empty[Unit] | ||
IRTraversal.postOrder(node).foreach { | ||
case t: TableRead => | ||
memo.bindIf(t.isDistinctlyKeyed, t, ()) | ||
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case t@TableKeyBy(child, keys, _) => | ||
memo.bindIf(child.typ.key.forall(keys.contains) && memo.contains(child), t, ()) | ||
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case t@(_: TableFilter | ||
| _: TableIntervalJoin | ||
| _: TableLeftJoinRightDistinct | ||
| _: TableMapRows | ||
| _: TableMapGlobals) => | ||
memo.bindIf(memo.contains(t.children.head), t, ()) | ||
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case t@RelationalLetTable(_, _, body) => | ||
memo.bindIf(memo.contains(body), t, ()) | ||
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case t@(_: TableHead | ||
| _: TableTail | ||
| _: TableRepartition | ||
| _: TableJoin | ||
| _: TableMultiWayZipJoin | ||
| _: TableRename | ||
| _: TableFilterIntervals) => | ||
memo.bindIf(t.children.forall(memo.contains), t, ()) | ||
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case t@(_: TableRange | ||
| _: TableDistinct | ||
| _: TableKeyByAndAggregate | ||
| _: TableAggregateByKey) => | ||
memo.bind(t, ()) | ||
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case _: MatrixIR => | ||
throw new IllegalArgumentException("MatrixIR should be lowered when it reaches distinct analysis") | ||
case _: BlockMatrixIR => | ||
case ir: IR => | ||
ir.children.foreach(child => analyze(child, memo)) | ||
} | ||
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case _ => | ||
memo | ||
} | ||
DistinctKeyedAnalysis(memo) | ||
} | ||
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} | ||
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case class DistinctKeyedAnalysis(distinctMemo: Memo[Unit]) { | ||
def contains(tableIR: BaseIR): Boolean = { | ||
distinctMemo.contains(tableIR) | ||
} | ||
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override def toString: String = distinctMemo.toString | ||
} |
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package is.hail.expr.ir | ||
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import is.hail.utils.TreeTraversal | ||
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object IRTraversal { | ||
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def postOrder: BaseIR => Iterator[BaseIR] = | ||
TreeTraversal.postOrder(_.children.iterator) | ||
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def preOrder: BaseIR => Iterator[BaseIR] = | ||
TreeTraversal.preOrder(_.children.iterator) | ||
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def levelOrder: BaseIR => Iterator[BaseIR] = | ||
TreeTraversal.levelOrder(_.children.iterator) | ||
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} |
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package is.hail.utils | ||
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import scala.collection.mutable | ||
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// "Lightweight" (less-safe) implementations of tree traversal algorithms | ||
// inspired by those in Guava | ||
object TreeTraversal { | ||
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def postOrder[A](adj: A => Iterator[A])(root: A): Iterator[A] = | ||
new Iterator[A] { | ||
// Java (and Scala) iterators mutate on `next()` so it's convenient | ||
// to hold on to a node and its children as we visit the node after | ||
// its children. | ||
private var stack = List((root, adj(root))) | ||
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override def hasNext: Boolean = stack.nonEmpty | ||
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override def next(): A = { | ||
while (stack.head._2.hasNext) { | ||
val node = stack.head._2.next() | ||
stack = (node, adj(node)) :: stack | ||
} | ||
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val (node, _) = stack.head | ||
stack = stack.tail | ||
node | ||
} | ||
} | ||
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def preOrder[A](adj: A => Iterator[A])(root: A): Iterator[A] = | ||
new Iterator[A] { | ||
private var stack = List(Iterator.single(root)) | ||
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override def hasNext: Boolean = stack.nonEmpty | ||
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override def next(): A = { | ||
val top = stack.head.next() | ||
if (!stack.head.hasNext) | ||
stack = stack.tail | ||
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val children = adj(top) | ||
if (children.hasNext) | ||
stack = children :: stack | ||
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top | ||
} | ||
} | ||
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def levelOrder[A](adj: A => Iterator[A])(root: A): Iterator[A] = | ||
new Iterator[A] { | ||
private val queue = mutable.Queue(Iterator.single(root)) | ||
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override def hasNext: Boolean = queue.nonEmpty | ||
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override def next(): A = { | ||
val top = queue.front.next() | ||
if (!queue.front.hasNext) | ||
queue.dequeue() | ||
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val children = adj(top) | ||
if (children.hasNext) | ||
queue.enqueue(children) | ||
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top | ||
} | ||
} | ||
} |
31 changes: 31 additions & 0 deletions
31
hail/src/test/scala/is/hail/utils/TreeTraversalSuite.scala
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package is.hail.utils | ||
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import org.testng.Assert | ||
import org.testng.annotations.Test | ||
class TreeTraversalSuite { | ||
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def binaryTree(i: Int): Iterator[Int] = | ||
(1 to 2).map(2 * i + _).iterator.filter(_ < 7) | ||
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@Test def testPostOrder = | ||
Assert.assertEquals( | ||
TreeTraversal.postOrder(binaryTree)(0).toArray, | ||
Array(3, 4, 1, 5, 6, 2, 0), | ||
"" | ||
) | ||
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@Test def testPreOrder = | ||
Assert.assertEquals( | ||
TreeTraversal.preOrder(binaryTree)(0).toArray, | ||
Array(0, 1, 3, 4, 2, 5, 6), | ||
"" | ||
) | ||
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@Test def levelOrder = | ||
Assert.assertEquals( | ||
TreeTraversal.levelOrder(binaryTree)(0).toArray, | ||
(0 to 6).toArray, | ||
"" | ||
) | ||
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} |