Add script to ensure example scripts keep working

.github/workflows/test_example_scripts.yml

@@ -0,0 +1,50 @@
+name: Test Example Scripts
+
+on:
+  push:
+    branches: [ main, staging ]
+  pull_request:
+    branches: [ main, staging]
+
+jobs:
+  run-scripts:
+    runs-on: 'ubuntu-latest'
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v2
+
+    - name: Set up Ruby
+      uses: ruby/setup-ruby@v1
+      with:
+        ruby-version: '3.3'
+
+    - name: Install Ruby dependencies
+      run: gem install httparty
+
+    - name: Run Ruby script
+      run: ruby examples/fetch_variant_links.rb
+
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.13'
+
+    - name: Install Python dependencies
+      run: pip install requests
+
+    - name: Run Python script
+      run: python examples/fetch_all_variants.py
+
+    - name: Set up R
+      uses: r-lib/actions/setup-r@v2
+      with:
+        r-version: '4.4'
+
+    - name: Install system dependencies for R packages
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev
+
+    - name: Run R script
+      run: Rscript examples/fetch_acmg_code.R

examples/fetch_acmg_code.R

@@ -1,3 +1,4 @@
+install.packages(c("ghql", "jsonlite", "dplyr"), repos="https://cloud.r-project.org")
 library(ghql)
 library(jsonlite)
 library(dplyr)

examples/fetch_all_variants.py

@@ -23,34 +23,28 @@ def run_query(query, variables):
       id
       name
       variantAliases
-      variantBases
-      referenceBases
-      referenceBuild
-      clinvarIds
-      alleleRegistryId
-      ensemblVersion
-      gene {
-        name
+        variantTypes {
         id
-        entrezId
+        soid
+        description
       }
-      hgvsDescriptions
-      primaryCoordinates {
-        start
-        stop
-        chromosome
-        representativeTranscript
+      ... on GeneVariant {
+        coordinates {
+          chromosome
+          start
+          stop
+          referenceBases
+          variantBases
+          representativeTranscript
+          referenceBuild
+        }
       }
-      secondaryCoordinates{
-        start
-        stop
-        chromosome
-        representativeTranscript
+      ... on FactorVariant {
+        name
+        ncitId
       }
-      variantTypes {
-        id
-        soid
-        description
+      ... on FusionVariant {
+        viccCompliantName
       }
     }
   }

examples/fetch_variant_links.rb

@@ -1,4 +1,5 @@
 require 'httparty'
+require 'json'
 
 def call_graphql_api(url:, query:, vars:)
   headers = {