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Clean up number of computations performed #11

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ajlee21 opened this issue Feb 13, 2019 · 0 comments

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ajlee21 commented Feb 13, 2019

Create separate function for Venn
Use pandas functions instead of for loop to create dataframes with high weight genes and metadata

explore_HighWeight_genes.py

weight = weight.assign(hw_mean=weight.mean(axis=0),
hw_std=weight.std(axis=0))

threshold_high_df = weight.hw_mean + (2 * weight.std)
threshold_low_df = weight.hw_mean - (2 * weight.std)

HW_metadata_df = pd.concat([weight.loc[:, ['hw_mean', 'hw_std']],
threshold_high_df,
threshold_low_df])

gwaybio mentioned this issue

Explore simulated data #9

Merged

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