0.0.9

[relase 0.0.8 was yanked because of small bug, we repeat the release notes here]
Most important changes:

• Python 3.12 support added (see note on installation)

• Consensus labels can now be used to streamline analysis across different sequences

  • to define neighborhoods
  • to define sequence-independent sites
  • to refine interface selections (see below)
  • as plot labels and as "sort_by" in plots

• API BREAKs

  • Definition of interfaces is made easier with refactor:
    • frag_idxs_group_1, frag_idxs_group_2' become interface_selection_1, interface_selection_2
    • new parameter AA_selection, accepts flexible amino-acid selection
    • self_interface operates differently, simply deleting self-contacts if not set to True
  • Some added returned values of public methods (e.g. repframes and flareplot_attrs) might break existing code, but its easy to adapt

• One new notebooks and new example datasets

• See the full log for all changes

Relevant PRs

• [python-package] add py312 by @gph82 in #50
• Select by grn by @gph82 in #51
• [nomenclature._sort_all_consensus_labels] API CHANGE return also sort… by @gph82 in #52

Full Changelog: 0.0.7...0.0.9