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Genetic Biosciences
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Genetic Biosciences

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gomez-d/README.md

Hello ✨ I am Daniel Gomez, a visionary πŸ‘¨β€πŸ’» Molecular Biologist and Bioinformatician πŸ‘¨β€πŸ”¬!

  • πŸ‘‹ Hi, I’m Daniel J. Gomez
  • πŸ‘€ I’m interested in computational biology, evidence-based and precision medicine.
  • 🌱 I’m currently learning genetics, single-cell and spatial multiomics.
  • πŸ’žοΈ I’m doing big data omics for MoTrPAC, HuBMAP, HTAN, PsychENCODE, and All of Us Researchers.
  • πŸ“« How to reach me sfdanielgomez@gmail.com
  • πŸ˜„ Pronouns: he/him/his
  • ⚑ Fun fact: I won 1st, 2nd, 3rd place in grappling/jiu-jitsu competitions and did academic research in 6 different medical schools.

My Academic website is here for your viewing pleasure 🧭 🌎.

  • πŸ—ΊοΈ My present graduate studies is in Spatially Resolved Technologies like Single-Cell Spatial Deep Omics Profiling in Health and Disease, AI/ML Data Science and Cloud Computing in Precision Medicine, Biomedicine, Genetics and Genomics, Multiomics, Translational Medicine, Immunology, Pathogenomics and Computational Biology.

  • Currently, I am doing my thesis research in exerkine mapping in preclinical models and the human body, exercise and physical activity, multiomics, interorgan communication, signal transduction networks, and building multiscale spatial atlases of interorgan crosstalk at single-cell resolution, near-single cell super-resolution, and connect cell-cell interactions with ligand-receptor interactions and their functions inside the cell that display the effect of exerkines measured in health, resilence and disease.

You can access and read my papers on Google Scholar ORCID

Research:

  • Precision Bioinformatics
  • Exerkines and Exercise
  • Mechanisms that underlie the benefits of exercise (exercise science research)
  • Exercise Genetics, Biochemistry, Molecular Biology, and Physiology
  • Precision Medicine to Network Medicine
  • Computational biology and whole-organism models
  • Spatial Multi-Omics and Multiplex Imaging
  • Histology and histopathology (Pathogenetics and pathogenomics)
  • Single-cell sequencing (sc/snATACseq, sc/snRNAseq, CITE-seq, etc)
  • Developing analytical tools to harness both high-dimensional single-cell phenotype data and spatial info
  • Spatial analysis of tissue architecture, neighborhood coordination and proximity analysis (cellular niches/areas)
  • Annotating spatially resolved single-cell data by spatial cell learning
  • Multi-omics multi-tissue molecular mapping (Tissue- and Organism-Wide Multi-omics)
  • Molecular Bioengineering, Nanotechnology, Nanomedicine, and Cell and Gene Thereapy
  • Cellular Physiology Contextualization

Technique Interests:

  • Genomics and Proteomics, Metabolomics (multiomics), Structural Variations and Predictions
  • Systems Biology and Applications
  • Biological Modeling and Evaluation, Drug Development
  • Data visualization, Data analysis, Data mining
  • Biological and Disease Modeling (AI/ML/DL)
  • Molecular neuroimmune-pathology, psychoneuroimmunology (PNI), neuroimmunopharmacology (NIP)
  • Neurotherapeutics and Nanotherapeutics discovery
  • Morphology and imaging (histology, whole slide imaging, multiplexing)

Skills

  • Data Science and Cloud Computing of Precision Medicine
  • Bioinformatics
  • Data Analysis and Data Visualization
  • Algorithm Development
  • Computational Biology
  • Statistical analysis and computing
  • Funcational assay development and experimental design
  • Sequence analysis
  • DNA isolation
  • Phylogenetics
  • Tissue (in situ) experiments (immunohistochemistry, in situ hybridization)
  • Machine Learning & Generative AI
  • Deep Learning, Reinforcement Learning
  • Processing large data sets
  • Neural networks
  • Big Data and Omics
  • Single Cell Research and Spatial Multiomics

Future Directions πŸ‘¨β€πŸ’»

- Biomedical Data Scientist

Hobbies

  • Working out (resistance training, cardiovascular exercise)
  • Hiking, Cycling, and Climbing
  • Reading, Listening to Audiobooks and Podcasts
  • Music and Movies

Pinned Loading

  1. gomez-d.github.io gomez-d.github.io Public

    Daniel's webpage

    HTML 1

  2. cwltool cwltool Public

    Forked from hubmapconsortium/cwltool

    Common Workflow Language reference implementation

    Python

  3. stellar stellar Public

    Forked from snap-stanford/stellar

    Jupyter Notebook 1

  4. maxfuse maxfuse Public

    Forked from shuxiaoc/maxfuse

    Jupyter Notebook

  5. codex-pipeline codex-pipeline Public

    Forked from hubmapconsortium/codex-pipeline

    CODEX data processing code

    Python

  6. intro_dgm intro_dgm Public

    Forked from jmtomczak/intro_dgm

    "Deep Generative Modeling": Introductory Examples

    Jupyter Notebook