Update calls to clp_area_penalties where deprecated func is called

[jsnel]

The deprecated equal_area_penalties would be called in lieu of the new clp_area_penalties function

The pyglotaran-examples have in their model still equal_area_penalties which is correctly swapped with clp_area_penalties but them model.equal_area_penalties was still called in some places instead of model.clp_area_penalties

Checklist

• ✔️ Passing the tests (mandatory for all PR's)
• 👌 Closes issue (mandatory for ✨ feature and 🩹 bug fix PR's)
• 🧪 Adds new tests for the feature (mandatory for ✨ feature and 🩹 bug fix PR's)

Closes issues

closes #789

[github-actions]

👈 Launch a binder notebook on branch jsnel/pyglotaran/fix/789_calls_to_clp_area_penalties

[sonarqubecloud]

Kudos, SonarCloud Quality Gate passed!   

0 Bugs
0 Vulnerabilities
0 Security Hotspots
7 Code Smells

No Coverage information
0.0% Duplication

[codecov]

Codecov Report

Merging #790 (95a8377) into staging (5e9eb22) will not change coverage.
The diff coverage is 0.0%.

@@           Coverage Diff           @@
##           staging    #790   +/-   ##
=======================================
  Coverage     83.9%   83.9%           
=======================================
  Files           75      75           
  Lines         4185    4185           
  Branches       752     752           
=======================================
  Hits          3512    3512           
  Misses         538     538           
  Partials       135     135           

Impacted Files	Coverage Δ
glotaran/model/clp_penalties.py	31.9% <0.0%> (ø)

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[github-actions]

Benchmark is done. Checkout the benchmark result page.
Benchmark differences below 5% might be due to CI noise.

Benchmark diff

Parametrized benchmark signatures:

BenchmarkOptimize.time_optimize(index_dependent, grouped, weight)

All benchmarks:

       before           after         ratio
     [dc00e6da]       [95a8377d]
     <v0.4.0>                   
-        67.4±1ms         45.7±1ms     0.68  BenchmarkOptimize.time_optimize(False, False, False)
-         377±3ms        57.9±10ms     0.15  BenchmarkOptimize.time_optimize(False, False, True)
-        92.7±2ms         75.8±1ms     0.82  BenchmarkOptimize.time_optimize(False, True, False)
         94.9±1ms         86.5±4ms     0.91  BenchmarkOptimize.time_optimize(False, True, True)
         65.2±2ms         62.4±1ms     0.96  BenchmarkOptimize.time_optimize(True, False, False)
-         374±4ms        69.5±10ms     0.19  BenchmarkOptimize.time_optimize(True, False, True)
         93.3±1ms         94.8±2ms     1.02  BenchmarkOptimize.time_optimize(True, True, False)
         96.2±1ms         105±50ms     1.09  BenchmarkOptimize.time_optimize(True, True, True)
             180M             179M     0.99  IntegrationTwoDatasets.peakmem_create_result
             197M             197M     1.00  IntegrationTwoDatasets.peakmem_optimize
-         288±3ms          236±3ms     0.82  IntegrationTwoDatasets.time_create_result
-      5.95±0.02s       2.00±0.07s     0.34  IntegrationTwoDatasets.time_optimize

[jsnel]

Ignore the codecov result comment which fails because the commit change single line function which are not under coverage so the relative change is through the roof even though the code coverage in absolute sense doesn't change.

[joernweissenborn]

Typical joern copy paste bugs, thx for fixing