Add missing works_lab fields (#198)

isaric/parsers/ccp-cameroon.toml

@@ -114,9 +114,9 @@
     description = "7) Employed as a health care worker / Employé en tant que travailleur de la santé ?                                                                                                "
     ref = "Y/N"
 
-  [subject.works_microbiology_lab]
+  [subject.works_lab]
     field = "q8_demographics"
-    description = "8) If health professional, specify / Si professionnel de santé"
+    description = "Laboratory professional"
     values = { 1 = false, 2 = false, 3 = false, 4 = false, 5 = true, 6 = false, 7 = false }
 
   [subject.has_asthma]

isaric/parsers/ccp-drc.toml

@@ -298,6 +298,11 @@
   description = "Health worker?"
   ref = "Y/N/NK"
 
+[subject.works_lab]
+  field = "microb"
+  description = "Employee of a microbiology laboratory"
+  values = { 1 = true }
+
 [subject.works_microbiology_lab]
   field = "microb"
   description = "Employee of a microbiology laboratory"

isaric/parsers/ccp-ghana.toml

@@ -332,6 +332,10 @@
     field = "dob"
     apply = { function = "splitDate", params = ["day", 2022, "%d/%m/%Y"] }
 
+  [subject.works_lab]
+    field = "microb"
+    values = { 1 = true }
+
   [subject.works_microbiology_lab]
     field = "microb"
     ref = "Y/N/NK"

isaric/parsers/ccp-guinea.toml

@@ -459,6 +459,11 @@
   description = "Employed as a health worker?"
   values = { 1 = true, 0 = false }
 
+[subject.works_lab]
+  field = "microb"
+  description = "Employee of a microbiology laboratory"
+  values = { 1 = true }
+
 [subject.works_microbiology_lab]
   field = "microb"
   description = "Employee of a microbiology laboratory"

isaric/parsers/ccp-netherlands.toml

@@ -96,6 +96,9 @@
     { field = "ethnic_group#Unknown", values = { "1.0" = "Unknown" } },
   ]
 
+[subject.works_lab]
+  field = "microbiology_worker"
+  values = { 1 = true }
 
 [subject.works_microbiology_lab]
   field = "microbiology_worker"

isaric/parsers/ccp-senegal.toml

@@ -244,8 +244,14 @@
   field = "healthwork_erterm"
   ref = "Y/N/NK"
 
+[subject.works_lab]
+  field = "labwork_erterm"
+  description = "employed in a biological analysis laboratory?"
+  values = { 1 = true }
+
 [subject.works_microbiology_lab]
   field = "labwork_erterm"
+  description = "employed in a biological analysis laboratory?"
   ref = "Y/N/NK"
 
 [subject.has_comorbidity_other]

isaric/parsers/ccp-spain.toml

@@ -62,9 +62,9 @@
       { field = "raza", values = { 1 = "White", 2 = "Black", 3 = "Hispanic", 4 = "Asian", 5 = "Arab", 6 = "Other" } },
     ]
 
-  [subject.works_microbiology_lab]
+  [subject.works_lab]
     field = "infhospi"
-    description = "Employed in a microbiology laboratory?"
+    description = "laboratory staff"
     values = { 2 = true }
 
   [subject.works_healthcare]

isaric/parsers/ccp-uganda-v2.toml

@@ -111,8 +111,9 @@
     description = "Gender"
     values = { 0 = "female", 1 = "male" }
 
-  [subject.works_microbiology_lab]
+  [subject.works_lab]
     field = "occupation"
+    description = "Lab worker"
     values = { 1 = false, 2 = false, 3 = false, 4 = false, 5 = false, 6 = true, 7 = false, 8 = false, 9 = false, 10 = false, 11 = false, 12 = false }
 
   [subject.works_healthcare]

isaric/parsers/datcov-southafrica.toml

@@ -122,10 +122,10 @@
     ]
     description = "Is the patient a healthcare worker?"
 
-  [subject.works_microbiology_lab]
+  [subject.works_lab]
     field = "healthwork_type"
     values = { 1 = false, 2 = false, 3 = false, 4 = true, 5 = false, 6 = false, 7 = false, 8 = false, 9 = false, 10 = false }
-    description = "Is the patient a healthcare worker?"
+    description = "laboratory worker"
 
   [subject.pregnancy] # pregnancy fields not in the data?
     field = "PregnancyStatus"

isaric/parsers/idor-brazil.toml

@@ -267,8 +267,14 @@
   field = "healthwork_erterm"
   ref = "Y/N/NK"
 
+[subject.works_lab]
+  field = "labwork_erterm"
+  description = "employed in a microbiology lab?"
+  values = { 1 = true }
+
 [subject.works_microbiology_lab]
   field = "labwork_erterm"
+  description = "employed in a microbiology lab?"
   ref = "Y/N/NK"
 
 [subject.has_comorbidity_other]

isaric/parsers/isaric-ccpuk.toml

@@ -69,6 +69,11 @@
       { field = "ethnic___10", values = { 1 = "Unknown" } },
     ]
 
+  [subject.works_lab]
+    field = "labwork_erterm"
+    values = { 1 = true }
+    description = "Employed in a microbiology laboratory?"
+
   [subject.works_microbiology_lab]
     field = "labwork_erterm"
     ref = "Y/N/NK"

isaric/parsers/isaric-rapid.toml

@@ -284,10 +284,10 @@
       { field = "flw2_ethnicity_oth", description = "Other ethnicity" },
     ]
 
-  [subject.works_microbiology_lab]
+  [subject.works_lab]
     field = "labwork_erterm"
     ref = "Y/N/NK"
-    description = "Employed in a microbiology laboratory?"
+    description = "laboratory worker"
 
   [subject.works_healthcare]
     field = "healthwork_erterm"

isaric/parsers/lmic.toml

@@ -145,7 +145,7 @@
     description = "Healthcare Worker?"
     ref = "Y/N/NK"
 
-  [subject.works_microbiology_lab] # This doesn't specify microB lab, but the syntax is the same as other isaric studies
+  [subject.works_lab]
     field = "labwork_erterm"
     description = "Laboratory Worker?"
     ref = "Y/N/NK"

isaric/parsers/ncov-malaysia.toml

@@ -126,6 +126,11 @@
   description = "Employed as a Healthcare Worker?"
   ref = "Y/N"
 
+[subject.works_lab]
+  field = "lab_worker"
+  description = "Employed in a microbiology laboratory?"
+  values = { 1 = true }
+
 [subject.works_microbiology_lab]
   field = "lab_worker"
   description = "Employed in a microbiology laboratory?"

isaric/parsers/sprintsari-australia.toml

@@ -109,6 +109,11 @@
     # 8 = "aged care worker"
     # 9 = "disability worker"
 
+  [subject.works_lab]
+    field = "healthwork_erterm"
+    description = "Employed a a healthcare worker or any of following professions?"
+    values = { 1 = false, 2 = false, 3 = false, 4 = true, 5 = false, 7 = false, 8 = false, 9 = false, 10 = false, 11 = false }
+
   [subject.works_microbiology_lab]
     field = "healthwork_erterm"
     description = "Employed a a healthcare worker or any of following professions?"

isaric/parsers/uganda-vri-v1.toml

@@ -87,7 +87,7 @@
     field = "sex"
     values = { 1 = "male", 0 = "female" }
 
-  [subject.works_microbiology_lab]
+  [subject.works_lab]
     field = "occupation"
     values = { 1 = false, 2 = false, 3 = false, 4 = false, 5 = false, 6 = true, 7 = false, 8 = false, 9 = false, 10 = false, 11 = false, 12 = false }
 

isaric/parsers/western-australia.toml

@@ -90,13 +90,12 @@
       "%d/%m/%Y",
     ] }
 
-
   [subject.works_healthcare]
     field = "healthwork_erterm"
     description = "Healthcare Worker?"
     ref = "Y/N/NK"
 
-  [subject.works_microbiology_lab]
+  [subject.works_lab]
     field = "labwork_erterm"
     description = "Laboratory worker?"
     ref = "Y/N/NK"