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@gianthk gianthk released this 27 May 12:00
· 14 commits to master since this release

New features

In this release of alrecon

  • process extended field of view scans
  • visual sinogram loader
  • custom sinogram normalization with separate flats and darks files
  • keep track of completed tasks with a list of your reconstructions
  • switched recon histogram plotter to matplotlib
  • expert user settings for HPC cluster integration
  • improved cluster and gspread integration instructions
  • enable sinogram range job submit
  • uses new dxchange.reader.readbeats
  • cluster jobs write reconstruction midplanes
  • directory autocompletion ('recon', 'cor') based on experiment dir and dataset name

Improved features

  • stripe removal through the alrecon interface and on slurm reconstruction jobs
  • attempt gpsread load keys

Bug fixes

  • free all processed data at new H5 file load
  • deactivate napari viewers if napari not installed
  • deactivate napari viewers if alrecon is launched as local host app
  • moved gspread key path to local config file
  • config and user_config YAML files
  • disable buttons:
    • Load if h5 file not selected
    • COR if data not loaded
    • Recon if data not loaded
    • write recon if data not reconstructed
    • napari proj if data not loaded
    • napari recon if data not reconstructed