chore: Modify GitHub actions workflow and add dependencies

.github/workflows/ci-docs.yml

@@ -42,13 +42,9 @@ jobs:
     - name: Check code quality
       run: pdm checks quality
 
-    - name: Check type annotations
-      run: pdm checks types
-
     - name: Check vulnerabilities in dependencies
-      uses: pyupio/safety-action@v1
-      with:
-        api-key: ${{ secrets.SAFETY_API_KEY }}
+      env:
+        SAFETY_API_KEY: ${{ secrets.SAFETY_API_KEY }}
       run: pdm checks dependencies
 
   tests:

.github/workflows/ci.yml

@@ -45,9 +45,8 @@ jobs:
       run: pdm checks types
 
     - name: Check vulnerabilities in dependencies
-      uses: pyupio/safety-action@v1
-      with:
-        api-key: ${{ secrets.SAFETY_API_KEY }}
+      env:
+        SAFETY_API_KEY: ${{ secrets.SAFETY_API_KEY }}
       run: pdm checks dependencies
 
   tests:

noxfile.py

@@ -99,7 +99,11 @@ def checks(session: nox.Session, file: str) -> None:
             requirements_path,
         ]
         session.run(*(args + dict(requirements_types)[file]), external=True)
-        session.run('safety', 'scan', '-r', requirements_path)
+        if os.environ.get('CI') is not None:
+            api_key = os.environ.get('SAFETY_API_KEY')
+            session.run('safety', '--key', api_key, '--stage', 'cicd', 'scan', '-r', requirements_path)
+        else:
+            session.run('safety', 'scan', '-r', requirements_path)
 
 
 @nox.session(python=PYTHON_VERSIONS)

pyproject.toml

@@ -77,6 +77,7 @@ docs = [
     "markdown-callouts>=0.4.0",
     "markdown-exec>=1.9.3",
     'pandas>=2.2.2',
+    "matplotlib>=3.9.2",
 ]
 formatting = [
     "black>=24.4.2",
@@ -88,6 +89,7 @@ checks = [
     "mypy>=1.10.1",
     "types-markdown>=3.6.0.20240316",
     "types-toml>=0.10.8.20240310",
+    "numpy>=2.1.2",
 ]
 tests = [
     "pytest>=8.2.2",