Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

update pyfaidx/gffutils #1285

Closed
wants to merge 3 commits into from
Closed

update pyfaidx/gffutils #1285

wants to merge 3 commits into from

Conversation

mschubert
Copy link
Contributor

@mschubert mschubert commented Jul 16, 2024

  • dev-python/pyfaidx: version bump 0.8.1.1 + move from sci-biology to dev-python
  • sci-bioloy/gffutils: version bump 0.13; fix tests
  • dev-python/pybedtools: version bump 0.10.0 + move from sci-biology to dev-python

@Nowa-Ammerlaan
Copy link
Member

This needs a move entry in profiles/updates.

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
@mschubert
Copy link
Contributor Author

I added the move

@mschubert
Copy link
Contributor Author

I also added an update to pybedtools to this PR (used to revdep on gffutils, not anymore)

Comment on lines 27 to 29
DEPEND="
dev-python/cython[${PYTHON_USEDEP}]
"
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This is not necessary, cython dep is added by DISTUTILS_EXT=1 (and it is definitely a bdep not dep)

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
@Nowa-Ammerlaan
Copy link
Member

Thanks 👍

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants