Merge pull request #270 from jamesqo/patch-3

Return non-zero exit code when annotation pipeline fails
genome-nexus · Feb 5, 2024 · 5d48eba · 5d48eba
2 parents 4268bf4 + 79ff464
commit 5d48eba
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/annotationPipeline/src/main/java/org/cbioportal/annotation/AnnotationPipeline.java b/annotationPipeline/src/main/java/org/cbioportal/annotation/AnnotationPipeline.java
@@ -131,6 +131,7 @@ public static void main(String[] args) {
             subMain(args);
         } catch (Exception e) {
             LOG.error(e.getMessage());
+            System.exit(1); // Return non-zero exit code so caller can determine if there was an exception thrown
         }
     }