Update naming

genepi · Feb 15, 2024 · 0d9516d · 0d9516d
1 parent eda6f6f
commit 0d9516d
Show file tree

Hide file tree

Showing 3 changed files with 7 additions and 7 deletions.
diff --git a/main.nf b/main.nf
@@ -10,7 +10,7 @@
 
 nextflow.enable.dsl = 2
 
-include { VNTR_CALLER } from './workflows/vntr-caller'
+include { VNTR_CALLING } from './workflows/vntr-calling'
 
 /*
 ========================================================================================
@@ -19,5 +19,5 @@ include { VNTR_CALLER } from './workflows/vntr-caller'
 */
 
 workflow {
-    VNTR_CALLER ()
+    VNTR_CALLING ()
 }
diff --git a/nextflow.config b/nextflow.config
@@ -1,11 +1,11 @@
 docker.enabled = true
 
 manifest {
-    name                                  = 'vntr-caller-nf'
+    name                                  = 'vntr-calling-nf'
     version                               = '0.4.7'
     description                           = 'Nextflow pipeline to resolve variants in VNTRS from sequencing data'
     author                                = 'Sebastian Schönherr'
-    homePage                              = 'https://github.com/genepi/vntr-caller-nf'
+    homePage                              = 'https://github.com/genepi/vntr-calling-nf'
     mainScript                            = 'main.nf'
     nextflowVersion                       = '!>=21.04.0'
 }
@@ -32,7 +32,7 @@ params {
 
 }
 
-process.container                 = 'quay.io/genepi/vntr-caller-nf:v0.4.7'
+process.container                 = 'quay.io/genepi/vntr-calling-nf:v0.4.7'
 
 
 // Load base.config by default for all pipelines
@@ -54,7 +54,7 @@ profiles {
     }
 
     development {
-        process.container                 = 'genepi/vntr-caller-nf:latest'
+        process.container                 = 'genepi/vntr-calling-nf:latest'
         docker.enabled                    = true
         docker.userEmulation              = true
         resume                            = true

diff --git a/workflows/vntr-caller.nf → workflows/vntr-calling.nf b/workflows/vntr-caller.nf → workflows/vntr-calling.nf
@@ -30,7 +30,7 @@ include { CALL_VARIANTS_MUTSERVE} from '../modules/local/call_variants_mutserve'
 include { CALCULATE_PERFORMANCE } from '../modules/local/calculate_performance'  addParams(outdir: "$outdir")
 
 
-workflow VNTR_CALLER {
+workflow VNTR_CALLING {
 
     BUILD_BWA_INDEX ( ref_fasta )