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GenePattern

A Platform for Reproducible Bioinformatics

30 followers
San Diego, CA
http://genepattern.org/
@genepattern

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genepattern-notebook genepattern-notebook Public

Platform for integrating genomic analysis with Jupyter Notebooks.

Python 44 12
genepattern-server genepattern-server Public

The GenePattern Server web application

HTML 35 18
genepattern-python genepattern-python Public

GenePattern Python Library

Python 12 4

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Showing 10 of 233 repositories

Tangram Public
A method for mapping sc/snRNA-seq data to various forms of spatial data collected from the same region.

genepattern/Tangram’s past year of commit activity

Python 1 0 0 0 Updated Oct 28, 2024
AmpliconSuite Public Forked from edwin5588/paa_custom
Wraps the AmpliconSuite-pipeline workflow to identify one or more connected genomic regions which have copy number amplifications.

genepattern/AmpliconSuite’s past year of commit activity

Python 1 2 0 0 Updated Oct 24, 2024
common_module_code Public
This repository contains the shared code used by the GenePattern modules.

genepattern/common_module_code’s past year of commit activity

0 0 0 0 Updated Oct 21, 2024
genepattern-server Public
The GenePattern Server web application

genepattern/genepattern-server’s past year of commit activity

HTML 35 18 0 4 Updated Oct 16, 2024
spatialGE.STclust Public
SpatialGE STClust module.

genepattern/spatialGE.STclust’s past year of commit activity

R 0 0 0 0 Updated Oct 8, 2024
tfsites.AnnotateAndVisualizeInSilicoSNVAnalysis Public
Farley Lab UCSD Collaboration

genepattern/tfsites.AnnotateAndVisualizeInSilicoSNVAnalysis’s past year of commit activity

Shell 0 BSD-3-Clause 0 0 0 Updated Sep 12, 2024
tfsites.AnnotateAndVisualizeTFSites Public
Farley lab collaboration

genepattern/tfsites.AnnotateAndVisualizeTFSites’s past year of commit activity

0 0 0 0 Updated Sep 12, 2024
spatialGE.STenrich Public
Spatial enrichment of gene sets based on https://github.com/FridleyLab/spatialGE

genepattern/spatialGE.STenrich’s past year of commit activity

R 0 0 0 0 Updated Sep 6, 2024
AmpliconSuiteAggregator Public Forked from AmpliconSuite/AmpliconSuiteAggregator
Aggregates the results from AmpliconSuite

genepattern/AmpliconSuiteAggregator’s past year of commit activity

Python 0 4 0 1 Updated Aug 19, 2024
spatialGE.Preprocessing Public
Repo for the GenePattern Preprocessing module based on https://github.com/FridleyLab/spatialGE

genepattern/spatialGE.Preprocessing’s past year of commit activity

R 0 0 0 0 Updated Aug 14, 2024

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