Corrected vignettes + script to produce paper plots and results.

[pepaaran]

The PR includes:

• Remove chain autocorrelation part in sensitivity analysis vignette.
• Bug fix in P-model use vignette (calibration result was hard coded for speed but not updated to match data without the year 2014, now updated).
• New script in analysis/paper_results.R to produce figures and RMSE results in the paper, even after vignettes are modified in the future.

[codecov-commenter]

Codecov Report

Patch and project coverage have no change.

Comparison is base (bd02f11) 93.53% compared to head (045c195) 93.53%.
Report is 7 commits behind head on master.

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Additional details and impacted files

@@           Coverage Diff           @@
##           master     #163   +/-   ##
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  Coverage   93.53%   93.53%           
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  Files          12       12           
  Lines        1083     1083           
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  Hits         1013     1013           
  Misses         70       70           

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[stineb]

@pepaaran , one test fails, therefore I haven't merged this PR.

[pepaaran]

It's a segmentation fault error that gets triggered sometimes (and quite randomly, also from ubuntu to mac system) with the \dontrun examples in the BiomeE documentation. I have no idea how to fix it (and spent some time on it), but it's been there for a long time and previous versions of the master branch. Any help is welcome.

[stineb]

Great job. Thanks @pepaaran