bump to v1.0.1

HISTORY.md

@@ -1,5 +1,10 @@
 # History
 
+# 1.0.1 (2024-11-22)
+
+* Thanks to the inimitable @[rrwick](https://github.com/rrwick), v1.0.1 is a patch fixing a string-parsing bug.
+* If your contig headers were integers, `dnaapler` did not rotate the found `BLAST/MMseqs2` hits. This was pre-existing (not introduced by v1.0.0).
+
 # 1.0.0 (2024-11-21)
 
 * **BREAKING CHANGE** - `dnaapler` now uses `MMSeqs2` rather than `BLAST`. You will need to install `MMSeqs` if you upgrade (if you use conda, it should be handled for you)

README.md

@@ -59,7 +59,7 @@ Larralde, M., (2022). Pyrodigal: Python bindings and interface to Prodigal, an e
 Hyatt, D., Chen, GL., LoCascio, P.F. et al. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11, 119 (2010). https://doi.org/10.1186/1471-2105-11-119.
 ```
 
-## v1.0.0
+## v1
 
 * **BREAKING CHANGE** - `dnaapler` now uses `MMSeqs2 v13.45111` rather than `BLAST`. You will need to install [MMSeqs2](https://github.com/soedinglab/MMseqs2) if you upgrade (if you use conda, it should be handled for you). The CLI is identical.
 * There are 2 reasons for this:
@@ -78,7 +78,7 @@ If you don't want to install `dnaapler` locally, you can run `dnaapler all` with
 - [dnaapler](#dnaapler)
   - [Quick Start](#quick-start)
   - [Paper](#paper)
-  - [v1.0.0](#v100)
+  - [v1](#v1)
 - [Google Colab Notebooks](#google-colab-notebooks)
   - [Table of Contents](#table-of-contents)
   - [Description](#description)

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "dnaapler"
-version = "1.0.0" # change VERSION too
+version = "1.0.1" # change VERSION too
 description = "Reorients assembled microbial sequences"
 authors = ["George Bouras <george.bouras@adelaide.edu.au>"]
 license = "MIT"

src/dnaapler/utils/VERSION

@@ -1 +1 @@
-1.0.0.
+1.0.1