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Run tests with 1.28, and add missing tool versions to sanitize allowlist #460

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Apr 17, 2024
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Run tests with 1.28, and add missing tool versions to sanitize allowlist #460

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859c6b7
Run tests with 1.28, and add missing tool versions to sanitize allowlist
afgane Mar 21, 2024
e81042c
Add plotly tools to allow list
afgane Apr 16, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/test.yaml
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Expand Up @@ -34,7 +34,7 @@ jobs:
- name: Start k8s locally
uses: jupyterhub/action-k3s-helm@v3
with:
k3s-version: v1.25.15+k3s2 # releases: https://github.com/k3s-io/k3s/tags
k3s-version: v1.28.7+k3s1 # releases: https://github.com/k3s-io/k3s/tags
metrics-enabled: false
traefik-enabled: false
- name: Verify function of k8s, kubectl, and helm
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17 changes: 15 additions & 2 deletions galaxy/values.yaml
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Expand Up @@ -498,22 +498,35 @@ configs:
toolshed.g2.bx.psu.edu/repos/bgruening/diff/diff/3.7+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/pharmcat/pharmcat/1.3.1+galaxy0
toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq/1.44+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq/1.28.1+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse_to_standalone/1.16.11+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse_to_standalone/1.16.11+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.6
toolshed.g2.bx.psu.edu/repos/iuc/meme_meme/meme_meme/5.0.5.0
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.6
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.5.0
toolshed.g2.bx.psu.edu/repos/iuc/prestor_abseq3/prestor_abseq3/0.6.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy3
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.1.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3r.1
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1
toolshed.g2.bx.psu.edu/repos/bgruening/plotly_regression_performance_plots/plotly_regression_performance_plots/0.1
toolshed.g2.bx.psu.edu/repos/bgruening/plotly_parallel_coordinates_plot/plotly_parallel_coordinates_plot/0.2
toolshed.g2.bx.psu.edu/repos/bgruening/plotly_parallel_coordinates_plot/plotly_parallel_coordinates_plot/0.1
build_sites.yml:
- type: ucsc
file: "{{if .Values.refdata.enabled}}/cvmfs/data.galaxyproject.org/managed/location/ucsc_build_sites.txt{{else}}/galaxy/server/tool-data/shared/ucsc/ucsc_build_sites.txt.sample{{end}}"
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