mini-tumors project

Data Science Lab 2022 Project - Mini-Tumors in Nanoliter-Droplets for Personalized Cancer Treatment

First start

Before you start working with the project, you have to setup the environment for the code. You can do this by following the instructions below:

• If you want to setup the project locally, check the instructions here.
• If you want to setup the project for the euler cluster, check the instructions here.

Prepare the datasets

• Download and prepare the dataset (instructions here).
• [Optional] If you want to do so, you can augment the training dataset, as this usually helps to produce a more robust model. Check the instructions here. However, this code is incomplete and we haven't yet fully integrated the use of augmented data in the training procedure.

Train the model and use it to perform predictions

• If you want to train the model, follow the instructions for local run or run on Euler.
• If you want to make the model produce results for an unlabelled dataset (inference), follow the instructions for local run or run on Euler.