othertools

encoding

napkin http://www.0x90.org/releases/napkin/

sqli

bsql-bf2 http://code.google.com/p/bsqlbf-v2/

web raider http://www.mavitunasecurity.com/blog/webraider/

sqlsus for mysql http://sqlsus.sourceforge.net/index.html

sfx-sqli for ms-sql http://www.kachakil.com/papers/SFX-SQLi-en.htm

sqlbrute - ms-sql and oracle - http://www.justinclarke.com/archives/2006/03/sqlbrute.html

proxy

owasp zap (recommended, has fuzzdb plugin) https://github.com/zaproxy

burp suite http://portswigger.net/

cat http://www.contextis.co.uk/resources/tools/cat/

webscarab http://www.owasp.org/index.php/Category:OWASP_WebScarab_Project#Download]

fuzzer

owasp Zap https://www.owasp.org/index.php/OWASP_Zed_Attack_Proxy_Project

burp intruder http://portswigger.net/

jbrofuzz http://sourceforge.net/projects/jbrofuzz/

webscarab http://www.owasp.org/index.php/Category:OWASP_WebScarab_Project#Download

pywebfuzz, a python implementation of fuzzdb, and much more http://code.google.com/p/pywebfuzz/

other brute force tools

CMS Explorer (the file patterns are in fuzzdb, but cms-explorer does more than that) http://code.google.com/p/cms-explorer/