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[bugfix] Update metaGEM.sh
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Fix path to `config.yaml` file for `metaGEM.sh` script.
As mentioned in #150, the `metaGEM.sh` wrapper cannot find the config file in question, a bug that was introduced after restructuring the repo to be compliant with the snakemake workflow catalogue [rules](https://snakemake.github.io/snakemake-workflow-catalog/?rules=true).
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franciscozorrilla authored Jan 11, 2024
1 parent 978ae33 commit 5cf3f32
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion workflow/metaGEM.sh
Original file line number Diff line number Diff line change
Expand Up @@ -267,7 +267,7 @@ snakeConfig() {

# Show config.yaml params
echo -e "\nPlease verify parameters set in the config.yaml file: \n"
paste config.yaml
paste ../config/config.yaml
echo -e "\nPlease pay close attention to make sure that your paths are properly configured!"

while true; do
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