add python wrapping to get particle masks and a test #1438
Workflow file for this run
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| name: CI:ubuntu-gcc | |
| on: | |
| push: | |
| branches: [ devel3 ] | |
| paths-ignore: | |
| - 'wiki/**' | |
| pull_request: | |
| branches: [ devel3 ] | |
| paths-ignore: | |
| - 'wiki/**' | |
| env: | |
| BUILD_TYPE: RelWithDebInfo | |
| jobs: | |
| build-and-test: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/fnalacceleratormodeling/synergia2-containers/ubuntu-gcc:main | |
| steps: | |
| - name: Cancel Previous runs | |
| uses: styfle/cancel-workflow-action@0.12.1 | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'true' | |
| - name: CMake | |
| run: | | |
| lscpu | |
| . /opt/spack-environment/activate.sh | |
| cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} \ | |
| -DCMAKE_INSTALL_PREFIX=${{github.workspace}}/install \ | |
| -DCMAKE_LINKER_TYPE=MOLD \ | |
| -DBUILD_PYTHON_BINDINGS=on -DPYTHON_EXECUTABLE=$(which python3) \ | |
| -DENABLE_KOKKOS_BACKEND=OpenMP \ | |
| -DBUILD_FD_SPACE_CHARGE_SOLVER=ON \ | |
| -DUSE_OPENPMD_IO=ON \ | |
| -DUSE_EXTERNAL_OPENPMD=ON \ | |
| -DUSE_EXTERNAL_KOKKOS=OFF -GNinja | |
| - name: build | |
| # build synergia2 | |
| run: | | |
| . /opt/spack-environment/activate.sh | |
| cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -j 2 | |
| - name: install | |
| # install synergia2 | |
| run: | | |
| . /opt/spack-environment/activate.sh | |
| cmake --install ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} | |
| - name: ctest | |
| # Execute tests defined by the CMake configuration. | |
| run: | | |
| . /opt/spack-environment/activate.sh | |
| cd ${{github.workspace}}/build | |
| ctest -C ${{env.BUILD_TYPE}} --output-on-failure | |
| # Debug: checkpoint at which to open tmate session | |
| #- name: Setup tmate session | |
| # uses: mxschmitt/action-tmate@v3 | |
| # with: | |
| # sudo: false | |
| - name: run-fodopy | |
| # Run the fodopy example from README. | |
| run: | | |
| . /opt/spack-environment/activate.sh | |
| export SYNINSTALL=${{github.workspace}}/install | |
| export LD_LIBRARY_PATH=${SYNINSTALL}/lib:${SYNINSTALL}/lib64:\${LD_LIBRARY_PATH} | |
| export PYTHON_VERSION=$(python3 -c 'import sys; print(".".join(map(str, sys.version_info[:2])))') | |
| export PYTHONPATH=${SYNINSTALL}/lib:${SYNINSTALL}/lib/python${PYTHON_VERSION}/site-packages:\${PYTHONPATH} | |
| cd ${{github.workspace}}/build/examples/fodo | |
| mpirun -np 1 python fodo_readme.py |