on bootstrap, toolkit-kustomization.yaml is not applied

[yawboateng]

toolkit-kustomization.yaml file is committed to the git repo but its not automatically applied to the cluster, which in turn doesnt not sync any files I add to the git repo. I had to manually kubectl apply it to get the cluster in sync

[stefanprodan]

The bootstrap is run on each commit in e2e tests. I've also tried it manually and I can't reproduce it, please supply the bootstrap logs.

[stefanprodan]

I've found the issue, the kustomization apply was skipped if there was one in the repo, but the previous apply could fail so it should apply every time.