Installation

dependencies:

tqdm
scipy
biopython
matplotlib
touch >= 1.1.0 (tested on 1.7.1) 
pandas 
numpy 
sklearn
tape_proteins
faiss-gpu

Usage instructions

• Transfer repertoire data to MetaVector:

02_calculate_repertoire_vectors.py --dataset_dirs ./data/example_repertoire.datalist --centroids_file ./results/data_analysis/96_best_centers.pk

License

Free use of MetaTCR is granted under the terms of the GNU General Public License version 3 (GPLv3).