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Usage Scenarios

Fritz Lekschas edited this page Aug 17, 2017 · 5 revisions

This page describes usage scenarios on how to analyze the following types of features in Hi-C contact maps.

Loops

Demo: Go to the public demo and select Loops in chromosome 22 of GM12878 from the list of predefined configs.

Instructions: Coming soon

Domains

Demo: Go to the public demo and select TADs in chromosome 4 of GM12878 from the list of predefined configs.

Instructions: Coming soon

Telomeres

Demo: Go to the public demo and select Telomere contacts of GM2878 or Telomere contacts of GM12878 vs K562 from the list of predefined configs.

Instructions: Coming soon

Enhancer-Promotor Units

Coming soon

Structural Variations

Coming soon