Updated webpage

R/FSAUtils.R

@@ -194,7 +194,8 @@ fishR <- function(where=c("home","IFAR","general","books",
   invisible(tmp)
 }
 
-
+#' @name fsaNews
+#' 
 #' @title Read news and changes for the 'FSA' package.
 #'
 #' @description Opens up the \href{https://github.com/droglenc/FSA/blob/master/NEWS.md}{News.md GitHub file} for the \sQuote{FSA} package in an external browser.

R/deprecated_fitPlot.R

@@ -118,15 +118,15 @@
 #' fitPlot(glm1)
 #' fitPlot(glm1,yaxis1.ticks=c(0,1),yaxis1.lbls=c(0,1))
 #'
-#' @rdname fitPlot-deprecated
+#' @rdname fitPlot
 #' @export
 fitPlot <- function (object, ...) {
   if ("lm" %in% class(object)) ## This is a hack so no double deprecation warning
     .Deprecated(msg="'fitPlot' is deprecated and will soon be removed from 'FSA'; see fishR post from 25-May-2021 for alternative methods.")
   UseMethod("fitPlot") 
 }
 
-#' @rdname fitPlot-deprecated
+#' @rdname fitPlot
 #' @export
 fitPlot.lm <- function(object, ...) {
   object <- iTypeoflm(object)
@@ -137,7 +137,7 @@ fitPlot.lm <- function(object, ...) {
   fitPlot(object,...)
 }
 
-#' @rdname fitPlot-deprecated
+#' @rdname fitPlot
 #' @export
 fitPlot.SLR <- function(object,plot.pts=TRUE,pch=16,col.pt="black",
                         col.mdl="red",lwd=3,lty=1,
@@ -196,7 +196,7 @@ fitPlot.SLR <- function(object,plot.pts=TRUE,pch=16,col.pt="black",
 }
 
 
-#' @rdname fitPlot-deprecated
+#' @rdname fitPlot
 #' @export
 fitPlot.IVR <- function(object,...) {
   ## Do some checks
@@ -369,14 +369,14 @@ iFitPlotIVR2 <- function(object,plot.pts=TRUE,pch=c(16,21,15,22,17,24,c(3:14)),
   }  # nocov end
 }
 
-#' @rdname fitPlot-deprecated
+#' @rdname fitPlot
 #' @export
 fitPlot.POLY <- function(object,...) {
   fitPlot.SLR(object,...)
 }
 
 
-#' @rdname fitPlot-deprecated
+#' @rdname fitPlot
 #' @export
 fitPlot.ONEWAY <- function (object,
                             xlab=object$Enames[1],ylab=object$Rname,main="",
@@ -410,7 +410,7 @@ fitPlot.ONEWAY <- function (object,
 } # nocov end
 
 
-#' @rdname fitPlot-deprecated
+#' @rdname fitPlot
 #' @export
 fitPlot.TWOWAY <- function(object,which,change.order=FALSE,
                            xlab=object$Enames[ord[1]],ylab=object$Rname,
@@ -465,7 +465,7 @@ fitPlot.TWOWAY <- function(object,which,change.order=FALSE,
 }
 
 
-#' @rdname fitPlot-deprecated
+#' @rdname fitPlot
 #' @export
 fitPlot.nls <- function(object,d,
                         pch=c(19,1),col.pt=c("black","red"),col.mdl=col.pt,
@@ -544,7 +544,7 @@ fitPlot.nls <- function(object,d,
   }
 }  # nocov end
 
-#' @rdname fitPlot-deprecated
+#' @rdname fitPlot
 #' @export
 fitPlot.glm <- function(object, ...) {
   if (object$family$family=="binomial" & object$family$link=="logit")
@@ -553,7 +553,7 @@ fitPlot.glm <- function(object, ...) {
     STOP("Currently only logistic regression GLM models are supported by fitPlot.")
 }
 
-#' @rdname fitPlot-deprecated
+#' @rdname fitPlot
 #' @export
 fitPlot.logreg <- function(object,
                            xlab=names(object$model)[2],ylab=names(object$model)[1],

_pkgdown.yml

@@ -90,7 +90,7 @@ reference:
       - binCI
       - hyperCI
       - poiCI
-      - bootstrap
+      - boot
       - dunnTest
       - extraSS
       - geomean
@@ -100,6 +100,7 @@ reference:
       - ksTest
       - logbtcf
       - lrt
+      - nlsBoot
       - nlsTracePlot
       - pcumsum
       - rSquared

docs/pkgdown.yml

@@ -2,7 +2,7 @@ pandoc: 2.11.4
 pkgdown: 1.6.1
 pkgdown_sha: ~
 articles: {}
-last_built: 2021-06-01T13:23Z
+last_built: 2021-06-01T21:47Z
 urls:
   reference: http://derekogle.com/FSA/reference
   article: http://derekogle.com/FSA/articles