mamba?

experimental-design · Oct 8, 2024 · 6140bdb · 6140bdb
1 parent 76eddd9
commit 6140bdb
Showing 1 changed file with 33 additions and 68 deletions.
diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml
@@ -42,39 +42,29 @@ jobs:
       - name: Check out repo
         uses: actions/checkout@v4
 
-      - name: Setup Conda
-        uses: conda-incubator/setup-miniconda@v3
-        with:
-          miniconda-version: "latest"
-          activate-environment: test
-          auto-activate-base: false  # Prevent automatic activation of the base environment
-          python-version: ${{ matrix.python-version }}
+      - name: Set up micromamba
+        uses: mamba-org/setup-micromamba@main
 
-      # Run `conda init` to initialize shell for conda
-      - name: Initialize Conda
-        shell: bash -l {0}
+      - name: Create mamba environment
         run: |
-          conda init bash
-          source ~/.bashrc  # Reload shell configuration after running `conda init`
-          conda activate test
+          micromamba create -n test python=${{ matrix.python-version }} --yes
+
+      - name: Install uv
+        run: micromamba run -n test pip install uv
 
       - name: Install conda-only dependencies, Python ${{ matrix.python-version }}
         shell: bash -l {0}
         run: |
-          conda install -c conda-forge cyipopt
-
-      - name: Set up uv
-        uses: astral-sh/setup-uv@v2
-        with:
-          enable-cache: true
+          micromamba install -n test -c conda-forge cyipopt --yes
 
       - name: Install remaining dependencies, Python ${{ matrix.python-version }}
         run: |
-          uv pip install -e ".[optimization,tests,cheminfo,xgb,entmoot]" --system
+          micromamba run -n test uv pip install -e ".[optimization,tests,cheminfo,xgb,entmoot]" --system
 
       - name: Run tests, Python ${{ matrix.python-version }}
         shell: bash -l {0}
         run: |
+          micromamba activate test
           pytest -ra --cov=bofire --cov-report term-missing tests
 
   testing_against_latest_botorch:
@@ -86,46 +76,33 @@ jobs:
       - name: Check out repo
         uses: actions/checkout@v4
 
-      - name: Setup Conda
-        uses: conda-incubator/setup-miniconda@v3
-        with:
-          miniconda-version: "latest"
-          activate-environment: test
-          auto-activate-base: false  # Prevent automatic activation of the base environment
-          python-version: ${{ matrix.python-version }}
+      - name: Set up micromamba
+        uses: mamba-org/setup-micromamba@main
 
-      # Run `conda init` to initialize shell for conda
-      - name: Initialize Conda
-        shell: bash -l {0}
+      - name: Create mamba environment
         run: |
-          conda init bash
-          source ~/.bashrc  # Reload shell configuration after running `conda init`
-          conda activate test
+          micromamba create -n test python=${{ matrix.python-version }} --yes
+
+      - name: Install uv
+        run: micromamba run -n test pip install uv
 
       - name: Install conda-only dependencies, Python ${{ matrix.python-version }}
         shell: bash -l {0}
         run: |
-          conda activate test
-          conda install -c conda-forge cyipopt
-
-      - name: Set up uv
-        uses: astral-sh/setup-uv@v2
-        with:
-          enable-cache: true
+          micromamba install -n test -c conda-forge cyipopt --yes
 
       - name: Install remaining dependencies, Python ${{ matrix.python-version }}
         run: |
-          conda activate test
-          uv pip install --upgrade git+https://github.com/cornellius-gp/linear_operator.git --system
-          uv pip install --upgrade git+https://github.com/cornellius-gp/gpytorch.git --system
+          micromamba run -n test uv pip install --upgrade git+https://github.com/cornellius-gp/linear_operator.git --system
+          micromamba run -n test uv pip install --upgrade git+https://github.com/cornellius-gp/gpytorch.git --system
           export ALLOW_LATEST_GPYTORCH_LINOP=true
-          uv pip install --upgrade git+https://github.com/pytorch/botorch.git --system
-          uv pip install ".[optimization,tests,cheminfo,xgb,entmoot]" --system
+          micromamba run -n test uv pip install --upgrade git+https://github.com/pytorch/botorch.git --system
+          micromamba run -n test uv pip install ".[optimization,tests,cheminfo,xgb,entmoot]" --system
 
       - name: Run tests, Python ${{ matrix.python-version }}
         shell: bash -l {0}
         run: |
-          conda activate test
+          micromamba activate test
           pytest -ra --cov=bofire --cov-report term-missing tests
 
   testing_tutorials:
@@ -137,39 +114,27 @@ jobs:
       - name: Check out repo
         uses: actions/checkout@v4
 
-      - name: Setup Conda
-        uses: conda-incubator/setup-miniconda@v3
-        with:
-          miniconda-version: "latest"
-          activate-environment: test
-          auto-activate-base: false  # Prevent automatic activation of the base environment
-          python-version: ${{ matrix.python-version }}
+      - name: Set up micromamba
+        uses: mamba-org/setup-micromamba@main
 
-      # Run `conda init` to initialize shell for conda
-      - name: Initialize Conda
-        shell: bash -l {0}
+      - name: Create mamba environment
         run: |
-          conda init bash
-          source ~/.bashrc  # Reload shell configuration after running `conda init`
+          micromamba create -n test python=${{ matrix.python-version }} --yes
+
+      - name: Install uv
+        run: micromamba run -n test pip install uv
 
       - name: Install conda-only dependencies, Python ${{ matrix.python-version }}
         shell: bash -l {0}
         run: |
-          conda activate test
-          conda install -c conda-forge cyipopt
-
-      - name: Set up uv
-        uses: astral-sh/setup-uv@v2
-        with:
-          enable-cache: true
+          micromamba install -n test -c conda-forge cyipopt --yes
 
       - name: Install remaining dependencies, Python ${{ matrix.python-version }}
         run: |
-          conda activate test
-          uv pip install ".[optimization,tests,cheminfo,xgb,entmoot,tutorials]" --system
+          micromamba run -n test uv pip install ".[optimization,tests,cheminfo,xgb,entmoot,tutorials]" --system
 
       - name: Run notebooks, Python ${{ matrix.python-version }}
         shell: bash -l {0}
         run: |
-          conda activate test
+          micromamba activate test
           python scripts/run_tutorials.py -p "$(pwd)"