Added breaking test to GeneReassignerTest for #224

exomiser · Aug 18, 2017 · e393c30 · e393c30
1 parent 59de5dc
commit e393c30
Showing 1 changed file with 16 additions and 0 deletions.
diff --git a/...e/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/GeneReassignerTest.java b/...e/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/GeneReassignerTest.java
@@ -162,6 +162,22 @@ public void assignsRegulatoryVariantToBestPhenotypicMatch_variantNotOriginallyAs
         assertThat(variant, isAssignedTo(gene1));
     }
 
+    @Test
+    public void assignsRegulatoryVariantToBestPhenotypicMatch_variantInTadButNotAssignedToKnownGene() {
+        addPriorityResultWithScore(gene1, 1d);
+        addPriorityResultWithScore(gene2, 0d);
+
+        TopologicalDomain tad = makeTad(1, 1, 20000, gene1, gene2);
+        instance = makeInstance(PriorityType.HIPHIVE_PRIORITY, tad);
+
+        Gene noKnownGene = new Gene(".", -1);
+
+        VariantEvaluation variant = regulatoryVariantInTad(tad, noKnownGene);
+        instance.reassignRegulatoryRegionVariantToMostPhenotypicallySimilarGeneInTad(variant);
+
+        assertThat(variant, isAssignedTo(gene1));
+    }
+
 
     @Test
     public void noneTypePrioritiser() {