Merge branch 'master' into sphinx=4+

executablebooks · Aug 29, 2021 · 109c7b7 · 109c7b7
2 parents 8fbfd74 + a3b2c6e
commit 109c7b7
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Showing 45 changed files with 108 additions and 87 deletions.
diff --git a/docs/conf.py b/docs/conf.py
@@ -105,7 +105,6 @@
     "dollarmath",
     "html_image",
 ]
-myst_url_schemes = ("http", "https", "mailto")
 panels_add_bootstrap_css = False
 
 

diff --git a/setup.cfg b/setup.cfg
@@ -44,7 +44,7 @@ install_requires =
     ipywidgets>=7.0.0,<8
     jupyter-cache~=0.4.1
     jupyter_sphinx~=0.3.2
-    myst-parser~=0.15.1
+    myst-parser~=0.15.2
     nbconvert>=5.6,<7
     nbformat~=5.0
     pyyaml

diff --git a/tests/test_execute/test_allow_errors_auto.ipynb b/tests/test_execute/test_allow_errors_auto.ipynb
@@ -47,7 +47,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.8"
+   "version": "3.8.10"
   },
   "test_name": "notebook1"
  },

diff --git a/tests/test_execute/test_allow_errors_auto.xml b/tests/test_execute/test_allow_errors_auto.xml
@@ -1,5 +1,5 @@
 <document source="basic_failing">
-    <section ids="a-title" names="a\ title">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="a-title" names="a\ title">
         <title>
             a title
         <paragraph>

diff --git a/tests/test_execute/test_allow_errors_cache.ipynb b/tests/test_execute/test_allow_errors_cache.ipynb
@@ -47,7 +47,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.8"
+   "version": "3.8.10"
   },
   "test_name": "notebook1"
  },

diff --git a/tests/test_execute/test_allow_errors_cache.xml b/tests/test_execute/test_allow_errors_cache.xml
@@ -1,5 +1,5 @@
 <document source="basic_failing">
-    <section ids="a-title" names="a\ title">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="a-title" names="a\ title">
         <title>
             a title
         <paragraph>

diff --git a/tests/test_execute/test_basic_failing_auto.ipynb b/tests/test_execute/test_basic_failing_auto.ipynb
@@ -47,7 +47,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.1"
+   "version": "3.8.10"
   },
   "test_name": "notebook1"
  },

diff --git a/tests/test_execute/test_basic_failing_auto.xml b/tests/test_execute/test_basic_failing_auto.xml
@@ -1,5 +1,5 @@
 <document source="basic_failing">
-    <section ids="a-title" names="a\ title">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="a-title" names="a\ title">
         <title>
             a title
         <paragraph>

diff --git a/tests/test_execute/test_basic_failing_cache.xml b/tests/test_execute/test_basic_failing_cache.xml
@@ -1,5 +1,5 @@
 <document source="basic_failing">
-    <section ids="a-title" names="a\ title">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="a-title" names="a\ title">
         <title>
             a title
         <paragraph>

diff --git a/tests/test_execute/test_basic_unrun_auto.ipynb b/tests/test_execute/test_basic_unrun_auto.ipynb
@@ -44,7 +44,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.7"
+   "version": "3.8.10"
   },
   "test_name": "notebook1"
  },

diff --git a/tests/test_execute/test_basic_unrun_auto.xml b/tests/test_execute/test_basic_unrun_auto.xml
@@ -1,5 +1,5 @@
 <document source="basic_unrun">
-    <section ids="a-title" names="a\ title">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="a-title" names="a\ title">
         <title>
             a title
         <paragraph>

diff --git a/tests/test_execute/test_basic_unrun_cache.ipynb b/tests/test_execute/test_basic_unrun_cache.ipynb
@@ -44,7 +44,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.1"
+   "version": "3.8.10"
   },
   "test_name": "notebook1"
  },

diff --git a/tests/test_execute/test_basic_unrun_cache.xml b/tests/test_execute/test_basic_unrun_cache.xml
@@ -1,5 +1,5 @@
 <document source="basic_unrun">
-    <section ids="a-title" names="a\ title">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="a-title" names="a\ title">
         <title>
             a title
         <paragraph>

diff --git a/tests/test_execute/test_complex_outputs_unrun_auto.ipynb b/tests/test_execute/test_complex_outputs_unrun_auto.ipynb
@@ -430,7 +430,7 @@
      "execution_count": 5,
      "metadata": {
       "filenames": {
-       "image/png": "/private/var/folders/t2/xbl15_3n4tsb1vr_ccmmtmbr0000gn/T/pytest-of-chrisjsewell/pytest-679/test_complex_outputs_unrun_aut0/source/_build/jupyter_execute/complex_outputs_unrun_22_0.png"
+       "image/png": "/private/var/folders/_w/bsp9j6414gs4gdlnhhcnqm9c0000gn/T/pytest-of-matthewmckay/pytest-37/test_complex_outputs_unrun_aut0/source/_build/jupyter_execute/complex_outputs_unrun_22_0.png"
       }
      },
      "output_type": "execute_result"
@@ -560,7 +560,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.8"
+   "version": "3.8.10"
   },
   "latex_envs": {
    "LaTeX_envs_menu_present": true,

diff --git a/tests/test_execute/test_complex_outputs_unrun_auto.xml b/tests/test_execute/test_complex_outputs_unrun_auto.xml
@@ -9,7 +9,7 @@
                 sym.init_printing(use_latex=True)
                 import numpy as np
                 from IPython.display import Image, Latex
-    <section ids="markdown" names="markdown">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="markdown" names="markdown">
         <title>
             Markdown
         <section ids="general" names="general">
@@ -84,7 +84,7 @@
                 \todo[inline]{an inline todo}
             <paragraph>
                 Some text.\todo{a todo in the margins}
-    <section ids="text-output" names="text\ output">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="text-output" names="text\ output">
         <title>
             Text Output
         <CellNode cell_type="code" classes="cell">
@@ -96,7 +96,7 @@
                     """)
             <CellOutputNode classes="cell_output">
                 <CellOutputBundleNode output_count="1">
-    <section ids="images-and-figures" names="images\ and\ figures">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="images-and-figures" names="images\ and\ figures">
         <title>
             Images and Figures
         <section ids="displaying-a-plot-with-its-code" names="displaying\ a\ plot\ with\ its\ code">
@@ -106,7 +106,7 @@
                 A matplotlib figure, with the caption set in the markdowncell above the figure.
             <paragraph>
                 The plotting code for a matplotlib figure (\cref{fig:example_mpl}).
-    <section ids="tables-with-pandas" names="tables\ (with\ pandas)">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="tables-with-pandas" names="tables\ (with\ pandas)">
         <title>
             Tables (with pandas)
         <paragraph>
@@ -122,7 +122,7 @@
                     df.round(3)
             <CellOutputNode classes="cell_output">
                 <CellOutputBundleNode output_count="1">
-    <section ids="equations-with-ipython-or-sympy" names="equations\ (with\ ipython\ or\ sympy)">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="equations-with-ipython-or-sympy" names="equations\ (with\ ipython\ or\ sympy)">
         <title>
             Equations (with ipython or sympy)
         <CellNode cell_type="code" classes="cell">
@@ -142,7 +142,7 @@
                     sym.rsolve(f,y(n),[1,4])
             <CellOutputNode classes="cell_output">
                 <CellOutputBundleNode output_count="1">
-    <section ids="interactive-outputs" names="interactive\ outputs">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="interactive-outputs" names="interactive\ outputs">
         <title>
             Interactive outputs
         <section ids="ipywidgets" names="ipywidgets">

diff --git a/tests/test_execute/test_complex_outputs_unrun_cache.ipynb b/tests/test_execute/test_complex_outputs_unrun_cache.ipynb
@@ -430,7 +430,7 @@
      "execution_count": 5,
      "metadata": {
       "filenames": {
-       "image/png": "/private/var/folders/t2/xbl15_3n4tsb1vr_ccmmtmbr0000gn/T/pytest-of-chrisjsewell/pytest-679/test_complex_outputs_unrun_cac0/source/_build/jupyter_execute/complex_outputs_unrun_22_0.png"
+       "image/png": "/private/var/folders/_w/bsp9j6414gs4gdlnhhcnqm9c0000gn/T/pytest-of-matthewmckay/pytest-37/test_complex_outputs_unrun_cac0/source/_build/jupyter_execute/complex_outputs_unrun_22_0.png"
       }
      },
      "output_type": "execute_result"
@@ -560,7 +560,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.8"
+   "version": "3.8.10"
   },
   "latex_envs": {
    "LaTeX_envs_menu_present": true,

diff --git a/tests/test_execute/test_complex_outputs_unrun_cache.xml b/tests/test_execute/test_complex_outputs_unrun_cache.xml
@@ -9,7 +9,7 @@
                 sym.init_printing(use_latex=True)
                 import numpy as np
                 from IPython.display import Image, Latex
-    <section ids="markdown" names="markdown">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="markdown" names="markdown">
         <title>
             Markdown
         <section ids="general" names="general">
@@ -84,7 +84,7 @@
                 \todo[inline]{an inline todo}
             <paragraph>
                 Some text.\todo{a todo in the margins}
-    <section ids="text-output" names="text\ output">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="text-output" names="text\ output">
         <title>
             Text Output
         <CellNode cell_type="code" classes="cell">
@@ -96,7 +96,7 @@
                     """)
             <CellOutputNode classes="cell_output">
                 <CellOutputBundleNode output_count="1">
-    <section ids="images-and-figures" names="images\ and\ figures">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="images-and-figures" names="images\ and\ figures">
         <title>
             Images and Figures
         <section ids="displaying-a-plot-with-its-code" names="displaying\ a\ plot\ with\ its\ code">
@@ -106,7 +106,7 @@
                 A matplotlib figure, with the caption set in the markdowncell above the figure.
             <paragraph>
                 The plotting code for a matplotlib figure (\cref{fig:example_mpl}).
-    <section ids="tables-with-pandas" names="tables\ (with\ pandas)">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="tables-with-pandas" names="tables\ (with\ pandas)">
         <title>
             Tables (with pandas)
         <paragraph>
@@ -122,7 +122,7 @@
                     df.round(3)
             <CellOutputNode classes="cell_output">
                 <CellOutputBundleNode output_count="1">
-    <section ids="equations-with-ipython-or-sympy" names="equations\ (with\ ipython\ or\ sympy)">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="equations-with-ipython-or-sympy" names="equations\ (with\ ipython\ or\ sympy)">
         <title>
             Equations (with ipython or sympy)
         <CellNode cell_type="code" classes="cell">
@@ -142,7 +142,7 @@
                     sym.rsolve(f,y(n),[1,4])
             <CellOutputNode classes="cell_output">
                 <CellOutputBundleNode output_count="1">
-    <section ids="interactive-outputs" names="interactive\ outputs">
+    <section classes="tex2jax_ignore mathjax_ignore" ids="interactive-outputs" names="interactive\ outputs">
         <title>
             Interactive outputs
         <section ids="ipywidgets" names="ipywidgets">