v0.2.8

• Added option --clean-names to all reformat commands
• Added raw distance computation with goalign compute distance -m rawdist
• Changed error handling in distance computations
• Added some tests

v0.2.7

• Changed nexus output datatype (format datatype=dna)
• Corrected fasta parser for sequences and names with spaces. Spaces in sequences are now removed, and spaces before sequence names are now removed

v0.2.7a

• Added goalign draw biojs command
• Added goalign reformat paml command

v0.2.6

• Added sliding window option to goalign subseq
• Added option to automatically rename sequences in goalign trim name
• Added possibility to give url as input alignment

v0.2.6b

• Added option --clean-names to goalign reformat phylip command
• Spaces and tabs are removed from start and end of sequence names
• Space and tabs are replaced by _ otherwise

v0.2.5

• Using dep to manage dependencies
• Removed dependency to gotree for nexus parser

v0.2.4

• Changed parsers for format auto detection

v0.2.4a

• Added --auto-detect format option to the root command

v0.2.3

• Added test for shuffle sites
• Added --stable-rogues option to shuffle sites

v0.2.3b

• goalign sample rarefy: now checks sequence names
• Added option for nexus input and output
• goalign concat now adds gaps when a sequence is not present
• Corrected phylip parser
• Added unknown alphabet
• Added goalign sort command