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A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution

Python 9 2 Updated Jan 12, 2025

upload big files to Zenodo using cURL, jq and bash

Shell 242 39 Updated Jul 26, 2024

A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability. DeepExplain also includes support for Shapley Values sampling. (ICLR 2018)

Python 744 134 Updated Aug 25, 2020

Model interpretability and understanding for PyTorch

Python 5,045 507 Updated Jan 22, 2025

Code for the paper: Towards Better Understanding Attribution Methods. CVPR 2022.

Python 16 4 Updated Jun 13, 2022

MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect

Jupyter Notebook 25 5 Updated Jan 24, 2025

Geometric relationships between manifold embeddings of a continuum of 3D molecular structures and their 2D projections

Python 3 Updated Feb 20, 2023

Software implementation for paper Heuristic Analysis of Manifolds from Simulated Cryo-EM Ensemble Data

Python 6 1 Updated Sep 16, 2022

video player for PyQt4

Python 1 Updated Mar 11, 2019

Path of least action analysis on energy landscapes

Python 6 1 Updated Aug 3, 2023

Simulation of cryo-EM ensemble data from atomic models of molecules exhibiting continuous motions

Python 13 2 Updated Jan 5, 2022
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