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Multi-body and moorings dynamics with Chrono for Proteus (#525)
* [ADD] Chrono wrappers for multibody dynamics * MBD: chrono moorings coupling working * MBD: Chrono collision detection added * MBD: chrono wrappers refactoring; external forces for cable * MBD: chrono cable external forces updated * typo fix * Chrono testing version for force oscillation * [BUG] chrono: nans in parallel when using moorings * [BUG] nans on master processor using hydra * mbd: commented out debugging lines; corrected typo * mbd: choice between beam and cable elements for moorings * [FIX] chrono calculations on rank 1 in parallel * ChElementCableANCF used in chrono; prescribed sine motion added * mbd: added documentation (partial) * MBD: cythonised further; py headers in different files * MBD: added ISS coupling scheme * msh2simplex: update node flags with face flags (3D) * Isosurfaces output in .h5 files * NumericalSolution: fix fileprefix when using gmsh for 3D domain * MBD: kdtree parallel lookup fixed; WIP on coupling schemes * MBD: added Euler beams for cables, updated external forces * msh2simplex: removed flag assignment for triangle nodes in 2D * MBD: added separated mesh motion function (translation/rotation) * reintroduced MeshAdaptPUMI in setup.py * Cekees/mbd/chrono (#570) * re-enabled Nitsche adjoint for pinc * updated optimized pressure calculation for projection scheme * enabled optimized pressure solve for rans3p * enabled optimized pressure solve for rans3p * fixed mass flux for rotational form of pressure calc * worked on isotropic interface size field * fix 2D Darcy term and isotropic adaptive scheme * update stack with fixed zoltan build * updated hashstack (chrono) * removed irrlicht dependency * enable avx extensions by default for chrono
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