Splicing coverage fix #14
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ghost
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ghost
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still needs test |
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@VictorAlexRoche tests need to be updated for bam files now that the coverage calculation has changed. |
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There had to be calculations done on top of pileup since pileup does not know of the occurences of the gaps, therefore, the gaps were subtracted using the flag:
pileupread.is_del
Checked and the coverage matches that on IGV
This branch still needs a test.