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@epi2me-labs

EPI2ME Labs

Bioinformatics resources from Oxford Nanopore Technologies Plc

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  1. kraken2-server kraken2-server Public

    Kraken2 Server

    C++ 21 3

  2. wf-transcriptomes wf-transcriptomes Public

    Nextflow 78 34

  3. wf-single-cell wf-single-cell Public

    Python 77 41

  4. wf-bacterial-genomes wf-bacterial-genomes Public

    Small variant calling for haploid samples

    Python 27 10

  5. wf-human-variation wf-human-variation Public

    Nextflow 108 49

  6. fastcat fastcat Public

    Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.

    C 33 4

Repositories

Showing 10 of 36 repositories
  • epi2me-labs/wf-transcriptomes’s past year of commit activity
    Nextflow 78 34 15 0 Updated Jan 3, 2025
  • epi2me-labs/epi2me-labs.github.io’s past year of commit activity
    HTML 8 2 0 0 Updated Jan 3, 2025
  • epi2me-labs/wf-single-cell’s past year of commit activity
    Python 77 41 11 0 Updated Jan 3, 2025
  • wf-bacterial-genomes Public

    Small variant calling for haploid samples

    epi2me-labs/wf-bacterial-genomes’s past year of commit activity
    Python 27 10 8 0 Updated Jan 2, 2025
  • wf-template Public

    Nextflow workflow template repository

    epi2me-labs/wf-template’s past year of commit activity
    Python 16 30 1 0 Updated Dec 23, 2024
  • epi2me-labs/wf-human-variation’s past year of commit activity
    Nextflow 108 49 23 0 Updated Dec 19, 2024
  • epi2me-labs/wf-clone-validation’s past year of commit activity
    Python 27 20 3 0 Updated Dec 19, 2024
  • epi2me-labs/wf-basecalling’s past year of commit activity
    Nextflow 35 17 11 1 Updated Dec 19, 2024
  • wf-metagenomics Public

    Metagenomic classification of long-read sequencing data

    epi2me-labs/wf-metagenomics’s past year of commit activity
    Python 68 23 4 0 Updated Dec 18, 2024
  • wf-amplicon Public
    epi2me-labs/wf-amplicon’s past year of commit activity
    Python 25 6 3 0 Updated Dec 18, 2024

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