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Added GitHub Actions workflow #827

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153 changes: 153 additions & 0 deletions .github/workflows/ngb-ci.yml
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#---------------------------------------------------------------------
# GitHub Action Workflow for NGB
# Version 1.1
# 2022
#---------------------------------------------------------------------

name: build
on:
push:
branches:
- 'develop'
- 'release/**'
paths-ignore:
- ".github/workflows/**"
- ".README.md"
- ".gitignore"
pull_request:
branches:
- '**'
paths-ignore:
- ".github/workflows/**"
- ".README.md"
- ".gitignore"
workflow_dispatch:

jobs:
build:
runs-on: ubuntu-latest
steps:

- name: Checkout repository
uses: actions/checkout@v3

- name: Setup Java JDK
uses: actions/setup-java@v2
with:
distribution: "temurin"
java-version: "8"
cache: "gradle"

- name: Correcting a Build Number
run: echo "BUILD_NUMBER=$(echo $((${{ github.run_number }}+5000)))" >> $GITHUB_ENV

- uses: actions/setup-node@v3
with:
node-version: 8

- name: Python Setup Action
uses: actions/setup-python@v3
with:
python-version: '3.9'
- run: python3 -m pip install mkdocs mkdocs-material

- name: Build JAR with H2 support and "everything" else (catgenome-h2.jar)
if: "!contains(github.ref_name, 'release')"
uses: gradle/gradle-build-action@v2
with:
arguments: buildJar buildCli buildDoc -PbuildNumber=${{ env.BUILD_NUMBER }}.${{ github.sha }} -PnoTest
- run: mv dist/catgenome.jar dist/catgenome-h2.jar
if: "!contains(github.ref_name, 'release')"

- name: Rebuild JAR with PSQL support only (catgenome-psql.jar)
if: "!contains(github.ref_name, 'release')"
uses: gradle/gradle-build-action@v2
with:
arguments: buildJar -PbuildNumber=${{ env.BUILD_NUMBER }}.${{ github.sha }} -PnoTest -Pdatabase=postgres
- run: |
mv dist/catgenome.jar dist/catgenome-psql.jar
cp dist/catgenome-h2.jar dist/catgenome.jar
if: "!contains(github.ref_name, 'release')"

- name: Docker. Build JAR with H2 support and "everything" else (catgenome-h2.jar)
if: "contains(github.ref_name, 'release')"
uses: gradle/gradle-build-action@v2
with:
arguments: buildJar buildCli buildDoc buildDocker -PbuildNumber=${{ env.BUILD_NUMBER }}.${{ github.sha }} -PnoTest
- run: mv dist/catgenome.jar dist/catgenome-h2.jar
if: "contains(github.ref_name, 'release')"

- name: Docker. Rebuild JAR with PSQL support only (catgenome-psql.jar)
if: "contains(github.ref_name, 'release')"
uses: gradle/gradle-build-action@v2
with:
arguments: buildJar -PbuildNumber=${{ env.BUILD_NUMBER }}.${{ github.sha }} -PnoTest -Pdatabase=postgres
- run: |
mv dist/catgenome.jar dist/catgenome-psql.jar
cp dist/catgenome-h2.jar dist/catgenome.jar
if: "contains(github.ref_name, 'release')"

- name: Generate JaCoCo test report
uses: gradle/gradle-build-action@v2
with:
arguments: jacocoTestReport

- name: Upload coverage report to Codecov
if: ${{ github.event_name == 'push' && (contains(github.ref_name, 'develop') || contains(github.ref_name, 'release')) }}
uses: codecov/codecov-action@v2

- name: Get current version
run: echo "NGB_VERSION=$(./gradlew :printVersion -PbuildNumber=$BUILD_NUMBER | grep "Project version is " | sed 's/^.*is //')" >> $GITHUB_ENV
- run: |
echo "Current version is ${NGB_VERSION}"
cd dist
echo "Creating ${NGB_VERSION} distribution"
mkdir -p ${NGB_VERSION}
for file in *
do
[[ -d $file ]] && continue
ext="${file#*.}"
filename="${file%%.*}"
versioned_file=${filename}-${NGB_VERSION}.${ext}
cp -rf "$file" "${NGB_VERSION}/${versioned_file}"
if [[ $versioned_file == *"ngb-docs"* ]]; then
DOCS_VERSION=$versioned_file
fi
done
echo "Publishing ${NGB_VERSION} distribution"

- name: Configure AWS Credentials
if: ${{ github.event_name == 'push' && (contains(github.ref_name, 'develop') || contains(github.ref_name, 'release')) }}
uses: aws-actions/configure-aws-credentials@v1
with:
aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }}
aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
aws-region: ${{ secrets.AWS_DEFAULT_REGION }}

- name: Copy a build artifact to AWS
if: ${{ github.event_name == 'push' && (contains(github.ref_name, 'develop') || contains(github.ref_name, 'release')) }}
run: aws s3 cp dist/${{ env.NGB_VERSION }} s3://ngb-oss-builds/public/builds/$GITHUB_REF_NAME/${{ env.NGB_VERSION }}/ --recursive
shell: bash

- name: Publishing to Docker Hub
if: ${{ github.event_name == 'push' && (contains(github.ref_name, 'release')) }}
run: |
echo ${{ secrets.DOCKER_PASSWORD }} | docker login --username ${{ secrets.DOCKER_USER }} --password-stdin
docker tag ngb:latest ${{ secrets.DOCKER_USER }}/ngb:${{ env.NGB_VERSION }}
docker push ${{ secrets.DOCKER_USER }}/ngb:${{ env.NGB_VERSION }}

- name: Upload a build artifact on the GitHub Actions job page
uses: actions/upload-artifact@v3
with:
name: ngb-${{ env.NGB_VERSION }}.${{ github.sha }}
path: dist/${{ env.NGB_VERSION }}/
retention-days: 7

- name: Create GitHub Release
if: ${{ github.event_name == 'push' && (contains(github.ref_name, 'release')) }}
uses: ncipollo/release-action@v1
with:
artifacts: "dist/${{ env.NGB_VERSION }}/*"
tag: ${{ env.NGB_VERSION }}
name: Release ${{ env.NGB_VERSION }}
token: ${{ secrets.GITHUB_TOKEN }}