Evaluating the generalizability of graph neural networks for predicting collision cross section

SPARC CCF Multi-omics analysis

Source code and data for "Natural products have increased rates of clinical trial success throughout the drug development process"

Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery"

Source code and data for "Exploring the known chemical space of the plant kingdom: Insights into taxonomic patterns, knowledge gaps, and bioactive regions"

Scripts and notebooks from Weighting low-intensity MS/MS ions and m/z frequency for spectral library annotation

Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"

multi-engine painting of mass spec data

code to generate sinusoidal embeddings

Source code and data for "Modern drug discovery using ethnobotany: A large-scale cross-cultural analysis of traditional medicine reveals common therapeutic uses"