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188 discrepancies betwee import and export formats rebased #198

Merged
merged 52 commits into from
Jan 22, 2021
Merged

188 discrepancies betwee import and export formats rebased #198

merged 52 commits into from
Jan 22, 2021

Commits on Jan 6, 2021

  1. minor - renaming function

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  2. moving general functions to super class (BaseImporter)

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  3. moving import_json method to BaseImporter

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  4. update JSON schemas URL

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  5. parse contacts affiliations as list

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  6. issue error on invalid data type

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  7. update records on import/update

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  8. adding missing fields to conform to JSON schema

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  9. removing id_at_source/pk field to conform to JSON schema

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  10. project mapped using project name

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  11. handle missing fields in import

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  12. fix typo

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  13. adding PartnerImporter class

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  14. adding superclasses ImportBaseCommand and ExportBaseCommand

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  15. fixing use_restriction export to comply to JSON schema

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  16. adding import_partners command

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  17. Adding JSONSchema validators

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  18. Adding missing test fixture - datatypes

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  19. tests - add email field to conform to JSON schema (required field)

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  20. Update of demo/test data to conform to JSONSchema 

    - wrapping list into new object
- changing elu-accession numbers to names
    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  21. typos + small fixes

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  22. is_local_contact method extraction

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  23. institution -> affiliations (from JSONSchema)

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  24. fix - process_partner() - expect string

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  25. add acronym to pass field UNIQUE constrain

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  26. skip elx_submission test

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  27. README - update import/export command doc

    @vildead @jLebioda
    vildead authored and jLebioda committed Jan 6, 2021
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  28. chore: restored ID to serialization of partner

    @jLebioda
    jLebioda committed Jan 6, 2021
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  29. chore: removed unused constant

    @jLebioda
    jLebioda committed Jan 6, 2021
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  30. fix: corrections in JSONSchemaValidator

    @jLebioda
    jLebioda committed Jan 6, 2021
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  31. fix: corrections in schema validator

    @jLebioda
    jLebioda committed Jan 6, 2021
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Commits on Jan 7, 2021

  1. chore: added elu-study schema

    @jLebioda
    jLebioda committed Jan 7, 2021
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  2. feat: changes in importer exceptions

    @jLebioda
    jLebioda committed Jan 7, 2021
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  3. fix: updated demo fixtures

    @jLebioda
    jLebioda committed Jan 7, 2021
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Commits on Jan 8, 2021

  1. fix: typo in load_demo_data command

    @jLebioda
    jLebioda committed Jan 8, 2021
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  2. feat: use restrictions renaming fields

    @jLebioda
    jLebioda committed Jan 8, 2021
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  3. fix: corrections in the importer

    @jLebioda
    jLebioda committed Jan 8, 2021
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Commits on Jan 11, 2021

  1. fix: improvements of the project/dataset importer

    @jLebioda
    jLebioda committed Jan 11, 2021
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  2. feat: include legal bases in the export

    @jLebioda
    jLebioda committed Jan 11, 2021
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Commits on Jan 12, 2021

  1. fix: updated test fixture

    @jLebioda
    jLebioda committed Jan 12, 2021
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  2. fix: corrected import of elu accession to be not null

    @jLebioda
    jLebioda committed Jan 12, 2021
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Commits on Jan 13, 2021

  1. fix: more corrections

    @jLebioda
    jLebioda committed Jan 13, 2021
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  2. feat: import legal bases

    @jLebioda
    jLebioda committed Jan 13, 2021
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  3. fix: bugfix

    @jLebioda
    jLebioda committed Jan 13, 2021
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Commits on Jan 14, 2021

  1. fix: a couple of fixes to the importers

    @jLebioda
    jLebioda committed Jan 14, 2021
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Commits on Jan 19, 2021

  1. fix: small improvement to handle null in consent status

    @jLebioda
    jLebioda committed Jan 19, 2021
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Commits on Jan 20, 2021

  1. feat: added projects and datasets to the API

    @jLebioda
    jLebioda committed Jan 20, 2021
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Commits on Jan 21, 2021

  1. fix: further changes to the importer/exporter

    @jLebioda
    jLebioda committed Jan 21, 2021
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  2. fix: corrections to use restriction

    @jLebioda
    jLebioda committed Jan 21, 2021
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Commits on Jan 22, 2021

  1. fix: pinpoint flower version in docker-compose

    @jLebioda
    jLebioda committed Jan 22, 2021
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  2. fix: use docker login in travis CI

    @jLebioda
    jLebioda committed Jan 22, 2021
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  3. chore: changed print to logger in json validation error handling

    @jLebioda
    jLebioda committed Jan 22, 2021
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