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145 update demo data to reflect bio medical domain #169

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May 11, 2020
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71 changes: 71 additions & 0 deletions core/importer/base_importer.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,71 @@

from core.models import Partner, Contact, ContactType
from core.models import User
from core.utils import DaisyLogger
from django.conf import settings
from core.constants import Groups as GroupConstants
from django.contrib.auth.models import Group


PRINCIPAL_INVESTIGATOR = 'Principal_Investigator'

class BaseImporter:

logger = DaisyLogger(__name__)

def process_contacts(self, project_dict):
local_custodians = []
local_personnel = []
external_contacts = []

home_organisation = Partner.objects.get(acronym=settings.COMPANY)

for contact_dict in project_dict.get('contacts', []):
first_name = contact_dict.get('first_name').strip()
last_name = contact_dict.get('last_name').strip()
email = contact_dict.get('email','').strip()
full_name = "{} {}".format(first_name, last_name)
role_name = contact_dict.get('role')
if home_organisation.elu_accession == contact_dict.get('institution').strip():
user = (User.objects.filter(first_name__icontains=first_name.lower(),
last_name__icontains=last_name.lower()) | User.objects.filter(
first_name__icontains=first_name.upper(), last_name__icontains=last_name.upper())).first()
if user is None:
self.logger.warning('no user found for %s an inactive user will be created', full_name)

usr_name = first_name.lower() + '.' + last_name.lower()
user = User.objects.create(username=usr_name, password='', first_name=first_name, last_name=last_name, is_active=False,
email=email,
)
user.staff = True

if role_name == PRINCIPAL_INVESTIGATOR:
g = Group.objects.get(name=GroupConstants.VIP.value)
user.groups.add(g)

user.save()
if role_name == PRINCIPAL_INVESTIGATOR:
local_custodians.append(user)
else:
local_personnel.append(user)

else:
contact = (Contact.objects.filter(first_name__icontains=first_name.lower(),
last_name__icontains=last_name.lower()) | Contact.objects.filter(
first_name__icontains=first_name.upper(), last_name__icontains=last_name.upper())).first()
if contact is None:
contact_type_pi, _ = ContactType.objects.get_or_create(name=role_name)
contact, _ = Contact.objects.get_or_create(
first_name=first_name,
last_name=last_name,
email=email,
type=contact_type_pi
)
affiliation = Partner.objects.get(elu_accession=contact_dict.get('institution'))
if affiliation:
contact.partners.add(affiliation)
contact.save()
external_contacts.append(contact)

return local_custodians, local_personnel, external_contacts

209 changes: 0 additions & 209 deletions core/importer/datadecs_importer.py

This file was deleted.

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