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Fix deprecation logging for lenient booleans
This commit fixes an issue with deprecation logging for lenient booleans. The underlying issue is that adding deprecation logging for lenient booleans added a static deprecation logger to the Settings class. However, the Settings class is initialized very early and in CLI tools can be initialized before logging is initialized. This leads to status logger error messages. Additionally, the deprecation logging for a lot of the settings does not provide useful context (for example, in the token filter factories, the deprecation logging only produces the name of the setting, but gives no context which token filter factory it comes from). This commit addresses both of these issues by changing the call sites to push a deprecation logger through to the lenient boolean parsing. Relates #22696
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