Merge pull request #161 from eggnogdb/v2

complete column names in result header. Fixes #152
eggnogdb · Oct 24, 2019 · 9196018 · 9196018
2 parents 41a8498 + d805097
commit 9196018
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diff --git a/README.md b/README.md
@@ -30,3 +30,4 @@ If you use this software, please cite:
       J Jensen, Christian von Mering, Peer Bork Nucleic Acids Res. 2019 Jan 8;
       47(Database issue): D309–D314. doi: 10.1093/nar/gky1085 
 ```
+
diff --git a/emapper.py b/emapper.py
@@ -702,7 +702,10 @@ def annotate_hits_file(seed_orthologs_file, annot_file, hmm_hits_file, args):
                           "seed_ortholog_evalue",
                           "seed_ortholog_score",
                           "best_tax_level", ]
-
+
+    HIT_OG_HEADER = ["taxonomic scope", "eggNOG OGs", "best eggNOG OG",
+                     "COG Functional cat.", "eggNOG free text desc."]
+
     start_time = time.time()
     seq2bestOG = {}
     if pexists(hmm_hits_file):
@@ -721,7 +724,7 @@ def annotate_hits_file(seed_orthologs_file, annot_file, hmm_hits_file, args):
         print >>OUT, '# emapper version:', get_version(), 'emapper DB:', get_db_version()
         print >>OUT, '# command: ./emapper.py ', ' '.join(sys.argv[1:])
         print >>OUT, '# time: ' + time.ctime()
-        print >>OUT, '\t'.join(HIT_HEADER + ANNOTATIONS_HEADER)
+        print >>OUT, '\t'.join(HIT_HEADER + ANNOTATIONS_HEADER + HIT_OG_HEADER)
     qn = 0
 
     pool = multiprocessing.Pool(args.cpu)