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Changes to support building R-keras and dependencies on POWER9 #9544

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Changes to support building R-keras and dependencies on POWER9 #9544

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9841b0e
Changes to support building R-keras and dependencies on POWER9
edmondac Dec 18, 2019
f013263
Adding patch for R on ppc from https://bugs.debian.org/cgi-bin/bugrep…
edmondac Dec 18, 2019
a6092a7
Adding another patch for R on ppc for a new config.guess
edmondac Dec 19, 2019
6cac517
Delete R-3.6.2_config.guess.patch
edmondac Dec 19, 2019
7ab5940
Adding another patch for R on ppc for a new config.guess for cubature
edmondac Dec 19, 2019
632a356
Removing liquidSVM as it is old and assumes intel hardware
edmondac Dec 20, 2019
dc183dc
Merge branch 'develop' into 20191218143904_new_pr_Mesa1917
edmondac Jan 10, 2020
dec26ca
Update R-3.6.2-foss-2019b.eb
edmondac Jan 23, 2020
ab277de
Delete cubature_2.0.4_config_guess.patch
edmondac Jan 23, 2020
431d8a8
Update R-3.6.2-fosscuda-2019b.eb
edmondac Jan 23, 2020
b9c71a5
Merge branch 'develop' into 20191218143904_new_pr_Mesa1917
edmondac Mar 23, 2020
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12 changes: 8 additions & 4 deletions easybuild/easyconfigs/r/R/R-3.6.2-foss-2019b.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,13 @@ toolchain = {'name': 'foss', 'version': '2019b'}

source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s']
sources = [SOURCE_TAR_GZ]
checksums = ['bd65a45cddfb88f37370fbcee4ac8dd3f1aebeebe47c2f968fd9770ba2bbc954']
patches = [
'%(name)s-%(version)s_base_ppc64le.patch',
]
checksums = [
'bd65a45cddfb88f37370fbcee4ac8dd3f1aebeebe47c2f968fd9770ba2bbc954', # R-3.6.2.tar.gz
'905b632f391bf0ccc9f326c54914a03dfb9eb3ef7bc6865e7fd5c2f2eb733f93', # R-3.6.2_base_ppc64le.patch
]

builddependencies = [
('pkg-config', '0.29.2'),
Expand Down Expand Up @@ -243,6 +249,7 @@ exts_list = [
'checksums': ['faa25754b757fe483b876f5d07b73f76f69a1baa971420892fadec4af4bbad21'],
}),
('cubature', '2.0.4', {
'update_config_guess': True,
'checksums': ['d97ce5eaac5e43910208e8274ddf6ff4f974d05688f0247ebccd807e24c2fe4a'],
}),
('DEoptimR', '1.0-8', {
Expand Down Expand Up @@ -2098,9 +2105,6 @@ exts_list = [
('asnipe', '1.1.12', {
'checksums': ['3a1f166f1c71b5877a2acca1384ec6c9b430b67af67ef26125f2abbb53c66206'],
}),
('liquidSVM', '1.2.4', {
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'checksums': ['15a9c7f2930e2ed3f4c5bcd9b042884ea580d2b2e52e1c68041600c196046aba'],
}),
('oddsratio', '2.0.0', {
'checksums': ['89bf3c68a6ded6a98f4ee8d487c29605ad00ac5f8db9b8bf1a52144e65332553'],
}),
Expand Down
12 changes: 8 additions & 4 deletions easybuild/easyconfigs/r/R/R-3.6.2-fosscuda-2019b.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,13 @@ toolchain = {'name': 'fosscuda', 'version': '2019b'}

source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s']
sources = [SOURCE_TAR_GZ]
checksums = ['bd65a45cddfb88f37370fbcee4ac8dd3f1aebeebe47c2f968fd9770ba2bbc954']
patches = [
'%(name)s-%(version)s_base_ppc64le.patch',
]
checksums = [
'bd65a45cddfb88f37370fbcee4ac8dd3f1aebeebe47c2f968fd9770ba2bbc954', # R-3.6.2.tar.gz
'905b632f391bf0ccc9f326c54914a03dfb9eb3ef7bc6865e7fd5c2f2eb733f93', # R-3.6.2_base_ppc64le.patch
]

builddependencies = [
('pkg-config', '0.29.2'),
Expand Down Expand Up @@ -244,6 +250,7 @@ exts_list = [
'checksums': ['faa25754b757fe483b876f5d07b73f76f69a1baa971420892fadec4af4bbad21'],
}),
('cubature', '2.0.4', {
'update_config_guess': True,
'checksums': ['d97ce5eaac5e43910208e8274ddf6ff4f974d05688f0247ebccd807e24c2fe4a'],
}),
('DEoptimR', '1.0-8', {
Expand Down Expand Up @@ -2099,9 +2106,6 @@ exts_list = [
('asnipe', '1.1.12', {
'checksums': ['3a1f166f1c71b5877a2acca1384ec6c9b430b67af67ef26125f2abbb53c66206'],
}),
('liquidSVM', '1.2.4', {
'checksums': ['15a9c7f2930e2ed3f4c5bcd9b042884ea580d2b2e52e1c68041600c196046aba'],
}),
('oddsratio', '2.0.0', {
'checksums': ['89bf3c68a6ded6a98f4ee8d487c29605ad00ac5f8db9b8bf1a52144e65332553'],
}),
Expand Down
19 changes: 19 additions & 0 deletions easybuild/easyconfigs/r/R/R-3.6.2_base_ppc64le.patch
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Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
Index: src/main/arithmetic.c
===================================================================
--- src/main/arithmetic.c (Revision 77583)
+++ src/main/arithmetic.c (Arbeitskopie)
@@ -176,8 +176,14 @@
#endif
}

+
#if HAVE_LONG_DOUBLE && (SIZEOF_LONG_DOUBLE > SIZEOF_DOUBLE)
+# ifdef __PPC64__
+ // PowerPC 64 (when gcc has -mlong-double-128) breaks here ...
+# define q_1_eps (1 / LDBL_EPSILON)
+# else
static LDOUBLE q_1_eps = 1 / LDBL_EPSILON;
+# endif
#else
static double q_1_eps = 1 / DBL_EPSILON;
#endif