{bio}[GCCcore/8.3.0] Varlociraptor v1.5.0

easybuild/easyconfigs/v/Varlociraptor/Varlociraptor-1.5.0-GCCcore-8.3.0.eb

@@ -0,0 +1,46 @@
+# This easyconfig was created by Christian Meesters of the HPC team at the Johannes Gutenberg University of Mainz.
+easyblock = 'Binary'
+
+name = 'Varlociraptor'
+version = "1.5.0"
+
+homepage = 'https://varlociraptor.github.io/'
+description = """Varlociraptor is a Flexible, uncertainty-aware variant calling program
+with parameter free filtration via FDR control.
+
+Key Features include:
+- Calls SNVs and indels in all length ranges (from small to structural) with a unified statistical model.
+- The statistical model entails all possible sources of uncertainty.
+- Resulting variant calls can be filtered by false discovery rate. No parameter tuning necessary.
+- Maximum a posteriori allele frequency estimates are provided with each call.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '8.3.0'}
+
+source_urls = ['https://github.com/varlociraptor/varlociraptor/archive']
+sources = ['v%(version)s.tar.gz']
+checksums = []
+builddependencies = [
+    ('binutils', '2.32'),
+    ('Rust', '1.37.0'),
+    ('Clang', '9.0.1'),
+    ('zlib', '1.2.11'),
+    ('XZ', '5.2.4'),
+]
+
+dependencies = [
+    ('GSL', '2.6'),
+]
+
+extract_sources = True
+
+install_cmd = "cargo install --root %(installdir)s --path ."
+
+sanity_check_paths = {
+    'files': ['bin/%(namelower)s'],
+    'dirs': [],
+}
+
+sanity_check_commands = ["%(namelower)s --help"]
+
+moduleclass = 'bio'