{bio}[GCC/12.3.0,foss/2023a] ExpressBetaDiversity v1.0.10, Seqmagick v0.8.6

easybuild/easyconfigs/e/ExpressBetaDiversity/ExpressBetaDiversity-1.0.10-GCC-12.3.0.eb

@@ -0,0 +1,45 @@
+easyblock = 'MakeCp'
+
+name = 'ExpressBetaDiversity'
+version = '1.0.10'
+
+homepage = 'https://github.com/donovan-h-parks/ExpressBetaDiversity'
+description = """Taxon- and phylogenetic-based beta diversity measures."""
+
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
+
+github_account = 'donovan-h-parks'
+source_urls = [GITHUB_SOURCE]
+sources = ['v%(version)s.tar.gz']
+checksums = ['c3ee0894ed0beea42f7668e531e53d01f4c19374d0dfd287cb400a68241c6c03']
+
+dependencies = [
+    ('Python', '3.11.3'),
+]
+
+prebuildopts = "cd source && "
+# fix wrong regex pattern which makes: FutureWarning: split() requires a non-empty pattern match.
+prebuildopts += "sed -i '36 s/*/+/' dep.py && "
+# force use python from dependencies not the one on a node
+buildopts = "DEP='python dep.py'"
+
+files_to_copy = [
+    'bin',
+    'unit-tests',
+    (['scripts/*'], 'bin')
+]
+
+sanity_check_paths = {
+    'files': ['bin/ExpressBetaDiversity'],
+    'dirs': ['unit-tests'],
+}
+
+sanity_check_commands = [
+    'ExpressBetaDiversity --help',
+    'convertToEBD.py --help',
+    # Unit tests need to be executed from the bin directory.
+    # See source/UnitTests.cpp:112: std::string seqCountFile = "../unit-tests/SimpleDataMatrix.env";
+    'cd bin && ExpressBetaDiversity -u',
+]
+
+moduleclass = 'bio'

easybuild/easyconfigs/s/Seqmagick/Seqmagick-0.8.6-foss-2023a.eb

@@ -0,0 +1,45 @@
+# EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+# Copyright:: Copyright 2016 University of Geneva Switzerland
+# Authors::   Yann Sagon <yann.sagon@unige.ch>
+# License::   MIT/GPL
+# Update:: Pavel Tománek (INUITS)
+
+easyblock = "PythonBundle"
+
+name = 'Seqmagick'
+version = '0.8.6'
+
+homepage = 'https://fhcrc.github.io/seqmagick/'
+description = """We often have to convert between sequence formats and do
+ little tasks on them, and it's not worth writing scripts for that. Seqmagick
+ is a kickass little utility built in the spirit of imagemagick to expose the
+ file format conversion in Biopython in a convenient way. Instead of having a
+ big mess of scripts, there is one that takes arguments."""
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+dependencies = [
+    ('Biopython', '1.83'),
+]
+
+exts_list = [
+    ('pygtrie', '2.5.0', {
+        'checksums': ['203514ad826eb403dab1d2e2ddd034e0d1534bbe4dbe0213bb0593f66beba4e2'],
+    }),
+    (name, version, {
+        'modulename': 'Bio',
+        'source_urls': ['https://files.pythonhosted.org/packages/source/s/seqmagick/'],
+        'sources': ['%(namelower)s-%(version)s.tar.gz'],
+        'checksums': ['7f09ef40836b12a2d4c842b179633f1087352855b6ff8fcd045d56003fee622a'],
+    }),
+]
+
+sanity_check_paths = {
+    'files': ['bin/seqmagick'],
+    'dirs': []
+}
+
+use_pip = True
+sanity_pip_check = True
+
+moduleclass = 'bio'