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avoid pollution in the tmp directory when running the AlphaFold tests #14989

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branfosj
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(created using eb --new-pr)

@branfosj branfosj added this to the next release (4.5.4?) milestone Feb 13, 2022
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Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0212u15a.bear.cluster - Linux RHEL 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2640 v4 @ 2.40GHz (broadwell), 1 x NVIDIA Tesla K40m, 470.57.02, Python 3.6.8
See https://gist.github.com/4ad3c6747c3d1c99caf83dc83e2b13c6 for a full test report.

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boegel commented Feb 15, 2022

@branfosj Is this patch also relevant for older AlphaFold version (2.1.0, 2.0.0)?

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@branfosj Is this patch also relevant for older AlphaFold version (2.1.0, 2.0.0)?

2.1.0 yes.

2.0.0 no. There was a single test, so this pollution problem will not occur. We could still add a similar patch to avoid reusing the directory anyway.

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boegel commented Feb 15, 2022

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3900.accelgor.os - Linux RHEL 8.4, x86_64, AMD EPYC 7413 24-Core Processor (zen3), 1 x NVIDIA NVIDIA A100-SXM4-80GB, 510.39.01, Python 3.6.8
See https://gist.github.com/ae8fb8fb2284fdb24f28f047f67d2684 for a full test report.

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boegel commented Feb 15, 2022

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3300.joltik.os - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6242 CPU @ 2.80GHz (cascadelake), 1 x NVIDIA Tesla V100-SXM2-32GB, 510.47.03, Python 3.6.8
See https://gist.github.com/e91489d6c52a69fe899cfc87402bca92 for a full test report.

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boegel commented Feb 15, 2022

Going in, thanks @branfosj!

@boegel boegel merged commit 85c3fda into easybuilders:develop Feb 15, 2022
@branfosj branfosj deleted the 20220213121840_new_pr_AlphaFold211 branch February 15, 2022 14:14
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2 participants